YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982522, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982522, gi|....

Description	E-value	Query Range	Subject Range
NADE_GEOUR - NH(3)-dependent NAD(+) synthetase OS=Geobacter uraniireducens (strain Rf4) GN=nadE PE=3 SV=1	236.0	[0..1]	[273..1]
gi\|78195313, gi\|... - gi\|78224058\|ref\|YP_385805.1\| NAD synthetase [Geobacter metallireducens GS-15], gi\|78195313\|gb\|ABB330...	227.0	[0..6]	[273..4]
gi\|110547075, gi... - gi\|222054594\|ref\|YP_002536956.1\| NAD+ synthetase [Geobacter sp. FRC-32], gi\|221563883\|gb\|ACM19855.1\|...	224.0	[0..1]	[273..2]
NAE2_THEMA, NADE... - (Q9X0Y0) Probable glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) (NAD(+) synthase [glutamine-hyd... NADE2_THEMA - Probable glutamine-dependent NAD(+) synthetase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DS...	222.0	[0..1]	[271..288]
gi\|90022198, gi\|... - gi\|90022198\|ref\|YP_528025.1\| Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Saccharophagu...	221.0	[0..12]	[272..265]
NADE_SYNY3 - Probable glutamine-dependent NAD(+) synthetase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=na... NADE_SYNY3 - Probable glutamine-dependent NAD(+) synthetase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / ... gi\|7451133 - pir\|\|S75927 hypothetical protein - Synechocystis sp. (strain PCC 6803)	220.0	[0..5]	[269..275]
NADE_AQUAE - Probable glutamine-dependent NAD(+) synthetase OS=Aquifex aeolicus GN=nadE PE=3 SV=1 NADE_AQUAE - Probable glutamine-dependent NAD(+) synthetase OS=Aquifex aeolicus (strain VF5) GN=nadE PE=3 SV=1	219.0	[0..11]	[271..293]
NADE_CHLTE - NH(3)-dependent NAD(+) synthetase OS=Chlorobium tepidum GN=nadE PE=3 SV=1 NADE_CHLTE - NH(3)-dependent NAD(+) synthetase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806...	218.0	[0..4]	[271..6]
gi\|67919127, gi\|... - gi\|67919127\|ref\|ZP_00512713.1\| NAD+ synthase [Chlorobium limicola DSM 245], gi\|67783215\|gb\|EAM42608....	216.0	[0..4]	[271..7]
gi\|36786622, gi\|... - gi\|37527188\|ref\|NP_930532.1\| NAD synthetase [Photorhabdus luminescens subsp. laumondii TTO1], gi\|367...	216.0	[0..6]	[272..258]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGLMVNAAL LRQVLVGFLR EEVHKVGVRK AVLGLSGGID SALVAFLAAE ALGPDNVHAI  60
   61 IMPYRTSNPE SEAHARLVAE QLGINHEVIE ITPMVDAYFT RFPDADNMRR GNKMARERMT 120
  121 ILYDHSAALG ALVLGTSNKT ELLLGYGTLY GDMASALNPI GDIYKTQVWQ LSETMGVPRQ 180
  181 IIEKKPSADL WAGQTDEQEL GFTYREVDEL LYCMIDLRMN RLELLARGFV ADFIDTVSGK 240
  241 VQNSHFKRRL PVIAKVSNRT IDRDFRYSRD WGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.09691
Match:	2e18A
Description:	No description for 2e18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits