YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982485, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982485, gi|....

Description	E-value	Query Range	Subject Range
gi\|78224096, gi\|... - gi\|78224096\|ref\|YP_385843.1\| cytochrome c assembly protein [Geobacter metallireducens GS-15], gi\|781...	211.0	[0..1]	[283..1]
gi\|88936328, gi\|... - gi\|88936328\|ref\|ZP_01141940.1\| cytochrome c biogenesis protein, CcmF/CcyK/CcsA family [Geobacter ura...	210.0	[0..1]	[282..1]
gi\|118503709, gi... - gi\|71838171\|ref\|ZP_00677932.1\| Cytochrome c assembly protein [Pelobacter propionicus DSM 2379], gi\|7...	207.0	[0..1]	[282..1]
gi\|83857085, gi\|... - gi\|83857085\|ref\|ZP_00950613.1\| putative membrane protein [Croceibacter atlanticus HTCC2559], gi\|8384...	204.0	[0..6]	[283..747]
gi\|110601695, gi... - gi\|110601695\|ref\|ZP_01389869.1\| Cytochrome c assembly protein [Geobacter sp. FRC-32], gi\|110547577\|g...	199.0	[0..37]	[281..4]
gi\|57237900, gi\|... - gi\|57237900\|ref\|YP_179148.1\| CcmF/CcyK/CcsA family cytochrome c biogenesis protein [Campylobacter je...	198.0	[0..7]	[283..781]
gi\|87249128, gi\|... - gi\|87305824\|ref\|ZP_01087977.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|85843625, gi\|... - gi\|86152740\|ref\|ZP_01070945.1\| nrfi protein [Campylobacter jejuni subsp. jejuni HB93-13], gi\|8584362...	198.0	[0..7]	[283..781]
gi\|88191337, gi\|... - gi\|88596496\|ref\|ZP_01099733.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|86150451, gi\|... - gi\|86150451\|ref\|ZP_01068676.1\| cytochrome c biogenesis protein, CcmF/CycK/CcsA family [Campylobacter... gi\|11347010 - pir\|\|B81303 probable membrane protein Cj1013c [imported] - Campylobacter jejuni (strain NCTC 11168) gi\|218562629, gi... - gi\|6968449\|emb\|CAB73269.1\| putative membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168]...	198.0	[0..7]	[283..781]
gi\|57018869, gi\|... - gi\|57240528\|ref\|ZP_00368477.1\| cytochrome c biogenesis protein (ycf5) [Campylobacter lari RM2100], g...	197.0	[0..6]	[283..733]
gi\|67854113, gi\|... - gi\|67924046\|ref\|ZP_00517496.1\| Cytochrome c assembly protein [Crocosphaera watsonii WH 8501], gi\|678...	197.0	[0..3]	[281..7]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSMLFNIT TFTYLVSMLA FFAFLASRNR HLGMAGSLIS YFGFFVHTAA ILLRWKESYD  60
   61 IGHGHAPLSN LYESVVFFAW TIVLIFGIID LKYKYR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [97-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVGAFVMPFA LLGMAWAQLT LNSGIEPLVP ALQSNWLLYH VVTCFLGYAA FAVACGISIM  60
   61 YLIKAGKEDS SQSAQAGGII SMFPPTKILD DLNYKAIMIG FPLLTLGIIT GAAWANYAWG 120
  121 TYWSWDPKET WSLIVWFVYA AFLHARFTRG WVGKRAAILS IVGFAATIFC YLGVNLLLSG 180
  181 LHSYGGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits