YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982441, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982441, gi|....

Description	E-value	Query Range	Subject Range
DYR_BACSU - Dihydrofolate reductase OS=Bacillus subtilis (strain 168) GN=dfrA PE=1 SV=2 DYR_BACSU - Dihydrofolate reductase OS=Bacillus subtilis GN=dfrA PE=1 SV=2 gi\|221323614 - gi\|221323614\|ref\|ZP_03604908.1\| dihydrofolate reductase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221319339 - gi\|221319339\|ref\|ZP_03600633.1\| dihydrofolate reductase [Bacillus subtilis subsp. subtilis str. JH64... gi\|221314416 - gi\|221314416\|ref\|ZP_03596221.1\| dihydrofolate reductase [Bacillus subtilis subsp. subtilis str. NCIB...	231.0	[0..2]	[159..1]
gi\|143742, gi\|66101 - pir\|\|RDBSD dihydrofolate reductase (EC 1.5.1.3) - Bacillus subtilis, gi\|143742\|gb\|AAA22853.1\| dihyd...	231.0	[0..2]	[159..1]
gi\|89100588, gi\|... - gi\|89100588\|ref\|ZP_01173447.1\| dihydrofolate reductase [Bacillus sp. NRRL B-14911], gi\|89084692\|gb\|E...	221.0	[0..2]	[159..1]
gi\|68545612, gi\|... - gi\|68545612\|ref\|ZP_00585162.1\| Dihydrofolate reductase [Shewanella amazonensis SB2B], gi\|68516641\|gb...	221.0	[0..1]	[156..1]
gi\|113868662, gi... - gi\|113868662\|ref\|YP_727151.1\| dihydrofolate reductase [Ralstonia eutropha H16], gi\|113527438\|emb\|CAJ...	219.0	[0..3]	[155..4]
gi\|17427958 - gi\|17427958\|emb\|CAD14648.1\| probable dihydrofolate reductase oxidoreductase protein [Ralstonia solan... gi\|17545665 - gi\|17545665\|ref\|NP_519067.1\| dihydrofolate reductase oxidoreductase protein [Ralstonia solanacearum ...	219.0	[0..3]	[155..4]
gi\|93355357, gi\|... - gi\|94311505\|ref\|YP_584715.1\| dihydrofolate reductase [Ralstonia metallidurans CH34], gi\|93355357\|gb\|...	218.0	[0..3]	[155..4]
gi\|83727479, gi\|... - gi\|83745789\|ref\|ZP_00942846.1\| Dihydrofolate reductase [Ralstonia solanacearum UW551], gi\|83727479\|g... gi\|207743703, gi... - gi\|207743703\|ref\|YP_002260095.1\| dihydrofolate reductase protein [Ralstonia solanacearum IPO1609], g... gi\|206590567, gi... - gi\|207725331\|ref\|YP_002255727.1\| dihydrofolate reductase protein [Ralstonia solanacearum MolK2], gi\|...	218.0	[0..3]	[155..4]
gi\|72118030, gi\|... - gi\|73540617\|ref\|YP_295137.1\| dihydrofolate reductase [Ralstonia eutropha JMP134], gi\|72118030\|gb\|AAZ...	217.0	[0..3]	[155..4]
gi\|115421601, gi... - gi\|187477015\|ref\|YP_785039.1\| dihydrofolate reductase [Bordetella avium 197N], gi\|115421601\|emb\|CAJ4...	217.0	[0..2]	[157..3]

Back

Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRITLIAAMA ENRVIGNRGA IPWHLPDDLA RFRAITLGHP VLMGRRTFES IGRPLPGRLN  60
   61 IVLSHREGYA PPGCLVARDL AAALELARDA AELFVCGGGE LYREALPLAD RILLTLVQGE 120
  121 FPGDVTFPEV PADFVETARE EGVGGPAHLF LTYERRKEAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	2qk8A
Description:	No description for 2qk8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits