YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995650, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995650, gi|....

Description	E-value	Query Range	Subject Range
gi\|90327510, gi\|... - gi\|90411620\|ref\|ZP_01219630.1\| hypothetical starvation-inducible outer membrane lipoprotein [Photoba...	222.0	[0..4]	[165..3]
gi\|54308266, gi\|... - gi\|54308266\|ref\|YP_129286.1\| starvation-inducible outer membrane lipoprotein [Photobacterium profund...	221.0	[0..4]	[165..3]
gi\|153823319, gi... - gi\|153823319\|ref\|ZP_01975986.1\| outer membrane lipoprotein Slp, putative [Vibrio cholerae B33], gi\|1... gi\|15641989, gi\|... - gi\|9656528\|gb\|AAF95135.1\| outer membrane lipoprotein Slp, putative [Vibrio cholerae O1 biovar El Tor... gi\|254849073, gi... - gi\|254849073\|ref\|ZP_05238423.1\| outer membrane lipoprotein Slp [Vibrio cholerae MO10], gi\|254844778\|... gi\|11355952 - pir\|\|B82133 probable outer membrane lipoprotein Slp VC1987 [imported] - Vibrio cholerae (strain N169... gi\|227082114, gi... - gi\|227082114\|ref\|YP_002810665.1\| putative outer membrane lipoprotein Slp [Vibrio cholerae M66-2], gi...	217.0	[0..1]	[157..20]
gi\|116189708, gi... - gi\|75830793\|ref\|ZP_00760065.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... gi\|126509232, gi... - gi\|153820222\|ref\|ZP_01972889.1\| starvation-inducible outer membrane lipoprotein [Vibrio cholerae NCT...	216.0	[0..1]	[157..3]
gi\|75814486 - gi\|75814486\|ref\|ZP_00745068.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol...	214.0	[0..1]	[157..3]
gi\|75827299 - gi\|75827299\|ref\|ZP_00756734.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... gi\|75817707 - gi\|75817707\|ref\|ZP_00748018.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Vibrio chol... tr\|A0A085TD48\|A0... - Outer membrane lipo, Slp family protein OS=Vibrio cholerae GN=DN30_811 PE=4 SV=1	213.0	[0..1]	[157..3]
gi\|116218596 - gi\|116218596\|ref\|ZP_01484229.1\| hypothetical protein VchoV5_02003199 [Vibrio cholerae V51]	213.0	[0..1]	[157..1]
gi\|58425285, gi\|... - gi\|58580691\|ref\|YP_199707.1\| outer membrane protein Slp [Xanthomonas oryzae pv. oryzae KACC10331], g...	212.0	[0..1]	[158..1]
gi\|37679235, gi\|... - gi\|37679235\|ref\|NP_933844.1\| starvation-inducible outer membrane lipoprotein [Vibrio vulnificus YJ01...	211.0	[0..3]	[155..5]
gi\|21230464, gi\|... - gi\|21230464\|ref\|NP_636381.1\| outer membrane protein Slp [Xanthomonas campestris pv. campestris str. ... gi\|66769542, gi\|... - gi\|66769542\|ref\|YP_244304.1\| outer membrane protein Slp [Xanthomonas campestris pv. campestris str. ... gi\|188992750, gi... - gi\|188992750\|ref\|YP_001904760.1\| Slp family outer membrane protein [Xanthomonas campestris pv. campe...	211.0	[0..1]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIRLLFVLV IACTLAGCAR QVISRESLLL AERSLSFAVV RENPNAYMGR HLLLGGAVAE  60
   61 TANRPDGAEL EVVQFSLDSD DRPQEKHGSE GRFLARSREF LDPLIFSRGR LVTLVGTVTG 120
  121 VTERRLDGTS YRYPVIAIRE MYVWRPEDPY AQPAVHFGIG VGVGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2f2fA
Description:	No description for 2f2fA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.202987767801423	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: