YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982384, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982384, gi|....

Description	E-value	Query Range	Subject Range
gi\|77995476, gi\|... - gi\|78043361\|ref\|YP_360107.1\| IclR family transcriptional regulator [Carboxydothermus hydrogenoforman...	273.0	[0..3]	[258..2]
gi\|76589242, gi\|... - gi\|76795434\|ref\|ZP_00777807.1\| regulatory proteins, IclR [Thermoanaerobacter ethanolicus ATCC 33223]... gi\|241902590, gi... - gi\|241902590\|ref\|ZP_04787323.1\| transcriptional regulator, IclR family [Thermoanaerobacter brockii s...	271.0	[0..4]	[258..2]
gi\|78195475, gi\|... - gi\|78224220\|ref\|YP_385967.1\| IclR family transcriptional regulator [Geobacter metallireducens GS-15]...	268.0	[0..1]	[260..1]
gi\|149948938, gi... - gi\|77687227\|ref\|ZP_00802500.1\| regulatory proteins, IclR [Alkaliphilus metalliredigenes QYMF], gi\|77...	266.0	[0..8]	[258..2]
gi\|77918373, gi\|... - gi\|77918373\|ref\|YP_356188.1\| IclR family transcriptional regulator [Pelobacter carbinolicus DSM 2380...	258.0	[0..1]	[260..1]
gi\|15614700, gi\|... - gi\|15614700\|ref\|NP_243003.1\| IclR family transcriptional regulator [Bacillus halodurans C-125], gi\|1... gi\|25298235 - pir\|\|A83917 transcription regulator (IclR family) BH2137 [imported] - Bacillus halodurans (strain C-...	258.0	[0..10]	[258..1]
gi\|56379913, gi\|... - gi\|56420071\|ref\|YP_147389.1\| IclR family transcriptional regulator [Geobacillus kaustophilus HTA426]...	258.0	[0..6]	[258..5]
gi\|71839924, gi\|... - gi\|71839924\|ref\|ZP_00679661.1\| regulatory proteins, IclR family [Pelobacter propionicus DSM 2379], g...	257.0	[0..11]	[258..17]
gi\|83572157, gi\|... - gi\|83589243\|ref\|YP_429252.1\| IclR family transcriptional regulator [Moorella thermoacetica ATCC 3907...	254.0	[0..1]	[258..1]
gi\|110805380, gi... - gi\|110805380\|ref\|YP_688900.1\| putative regulator [Shigella flexneri 5 str. 8401], gi\|110614928\|gb\|AB...	254.0	[0..2]	[259..4]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKDKSEYI IQAVDHALDL LEQFHDDVDE LGVTELSKRL KLHKNNVFRL LATLESRGYI  60
   61 EQNKVTENYR LGLKTLELGQ TFIRQMGLLR QSRPVLEWLV NQCNETAYVA ILKDQSIVYL 120
  121 DVVETDLTVR VVPRVGSRLP AYCTAAGKVQ IAWMNDEELD SFFPQRELKP FTPNTITDRE 180
  181 VLRKHLREVV EQGYAVDNEE LDIGVRCVGA PIRDYTRRII GAVSLSGPSM RFTDERLDKE 240
  241 LIPLVKKAAD EISMKLGFHR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.30103
Match:	1mkmA
Description:	Thanscriptional regulator IclR, N-terminal domain; Thanscriptional regulator IclR, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits