YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995561, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995561, gi|....

Description	E-value	Query Range	Subject Range
MTNN_PHOLL - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Photorhabdus luminescens subsp. laumon... MTNN_PHOLL - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Photorhabdus luminescens subsp. laumon...	189.0	[0..2]	[243..1]
MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain CMCP6) GN=mt... MTNN_VIBVU - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus GN=mtnN PE=3 SV=1	189.0	[0..2]	[239..1]
MTNN_VIBVY - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio vulnificus (strain YJ016) GN=mt...	189.0	[0..2]	[239..1]
MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans (strain ATCC BAA-1... MTNN_BACHD - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Bacillus halodurans GN=mtnN PE=3 SV=1	189.0	[0..1]	[240..1]
MTNN_HAES1 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Haemophilus somnus (strain 129Pt) GN=m...	188.0	[0..2]	[239..1]
MTNN_HISS2 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Histophilus somni (strain 2336) GN=mtn...	187.0	[0..2]	[239..1]
gi\|75819925, gi\|... - gi\|75819925\|ref\|ZP_00749986.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V51], gi\|254226150...	186.0	[0..2]	[239..1]
gi\|126519706, gi... - gi\|229512247\|ref\|ZP_04401726.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|194535206, gi... - gi\|75823413\|ref\|ZP_00752916.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae RC385], gi\|2542235... gi\|116187810, gi... - gi\|75828836\|ref\|ZP_00758172.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae MO10], gi\|25484950... MTNN_VIBC3 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... MTNN_VIBCM - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain M6... gi\|121727503, gi... - gi\|75816484\|ref\|ZP_00746953.1\| COG0775: Nucleoside phosphorylase [Vibrio cholerae V52], gi\|121727503... gi\|229355062, gi... - gi\|229507557\|ref\|ZP_04397062.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229519383, gi... - gi\|229519383\|ref\|ZP_04408826.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229521212, gi... - gi\|229521212\|ref\|ZP_04410632.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|90074872 - gi\|90074872\|dbj\|BAE87113.1\| MTA/SAH nucleosidase [Vibrio cholerae bv. albensis] gi\|229524369, gi... - gi\|229524369\|ref\|ZP_04413774.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229332405, gi... - gi\|229528631\|ref\|ZP_04418021.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosid... gi\|229607063, gi... - gi\|229607063\|ref\|YP_002877711.1\| 5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosi... gi\|148875697, gi... - gi\|153828821\|ref\|ZP_01981488.1\| MTA/SAH nucleosidase [Vibrio cholerae 623-39], gi\|148875697\|gb\|EDL73... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae GN=mtnN PE=1 SV=1 gi\|121547542, gi... - gi\|121588200\|ref\|ZP_01677944.1\| MTA/SAH nucleosidase [Vibrio cholerae 2740-80], gi\|121547542\|gb\|EAX5... gi\|124114403, gi... - gi\|153216216\|ref\|ZP_01950320.1\| MTA/SAH nucleosidase [Vibrio cholerae 1587], gi\|124114403\|gb\|EAY3322... gi\|124118458, gi... - gi\|153223035\|ref\|ZP_01953610.1\| MTA/SAH nucleosidase [Vibrio cholerae MAK 757], gi\|124118458\|gb\|EAY3... MTNN_VIBCH - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Vibrio cholerae serotype O1 (strain AT... gi\|153819136, gi... - gi\|153819136\|ref\|ZP_01971803.1\| MTA/SAH nucleosidase [Vibrio cholerae NCTC 8457], gi\|126510326\|gb\|EA...	186.0	[0..2]	[239..1]
gi\|46128809 - gi\|46128809\|ref\|ZP_00201937.1\| COG0775: Nucleoside phosphorylase [Haemophilus influenzae R2846]	185.0	[0..2]	[240..1]
MTNN_STAES - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATC... MTNN_STAEQ - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase OS=Staphylococcus epidermidis (strain ATC...	185.0	[0..4]	[239..2]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPILVVAAT RQELTLLIRS LGARERGGAG RRPSWLGKVG LLPVVLAETG IGKVNTAAAL  60
   61 AALFENFIPR LVINTGCAGA YTASGLRVGD LAVASAEISG DEGVLTPQGW EGLDLIGIPA 120
  121 LERKGVRYFN EFPLSLHPAE QAVQLATALG IPLRRGKFVT VSTCSGITAR GDELASRFDA 180
  181 ICENMEGAAM AQVALDYGVD CLEVRGVSNM VEDRDLSRWN LPLAVEKAQR FIIKYLETCG 240
  241 EEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1zosA
Description:	No description for 1zosA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits