YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982310, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982310, gi|....

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	207.0	[0..6]	[290..967]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	190.0	[0..2]	[293..64]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	190.0	[0..1]	[292..618]
gi\|115732277, gi... - gi\|115898775\|ref\|XP_792747.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	189.0	[0..2]	[295..48]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	188.0	[0..1]	[295..63]
UBIA_SACD2 - 4-hydroxybenzoate octaprenyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM ...	188.0	[0..5]	[293..8]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	186.0	[0..17]	[292..118]
COQ2_BOVIN - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1	185.0	[0..2]	[292..58]
gi\|50746583 - gi\|50746583\|ref\|XP_420564.1\| PREDICTED: similar to hypothetical protein CL640 [Gallus gallus]	183.0	[0..3]	[292..65]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	183.0	[0..2]	[292..108]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSEEGLEKG MFAKIRVFLE MIKFSHTVFA LPFAFTGAVL AADGMPSAHQ VFWILMAMVG  60
   61 ARTAAMGMNR LIDAEIDARN PRTASRAIPA GLIGTGTVAL FIVLSILLML YAAWQLNPLC 120
  121 LYLSPVALFF LGLYSYCKRF TSLAHVVLGI CLAAAPLGAW IAIRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [166-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVEVPAILLG LAVLFWVAGF DILYALQDLD FDRASGLHSI PVRLGVNGSL WAARVFHLVM  60
   61 LGLLAGLYLS AGLGPWFLAG LAATIAMLGY EHWLLRHGDL TKLDAAFFTM NGYISITLFV 120
  121 ATLADVLAGR GGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits