YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982301, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982301, gi|....

Description	E-value	Query Range	Subject Range
gi\|78195758, gi\|... - gi\|78224503\|ref\|YP_386250.1\| hypothetical protein Gmet_3312 [Geobacter metallireducens GS-15], gi\|78...	126.0	[0..1]	[135..1]
gi\|28806395 - gi\|28806395\|dbj\|BAC59667.1\| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28898178, gi\|... - gi\|28898178\|ref\|NP_797783.1\| hypothetical protein VP1404 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	124.0	[0..6]	[133..25]
gi\|254227693, gi... - gi\|75857299\|ref\|ZP_00764916.1\| COG3518: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	123.0	[0..6]	[133..7]
gi\|91224825, gi\|... - gi\|91224825\|ref\|ZP_01260085.1\| hypothetical protein V12G01_01490 [Vibrio alginolyticus 12G01], gi\|91... gi\|225382154 - gi\|225382154\|gb\|ACN89295.1\| type VI secretion system lysozyme-related protein [Vibrio alginolyticus]	123.0	[0..6]	[133..7]
gi\|78065038, gi\|... - gi\|78065038\|ref\|YP_367807.1\| hypothetical protein Bcep18194_A3562 [Burkholderia sp. 383], gi\|7796578... gi\|118649597, gi... - gi\|170731801\|ref\|YP_001763748.1\| type VI secretion system lysozyme-related protein [Burkholderia cen... gi\|198034787, gi... - gi\|206558750\|ref\|YP_002229510.1\| putative type VI secretion system protein TssE [Burkholderia cenoce... gi\|254246493, gi... - gi\|84356550\|ref\|ZP_00981392.1\| COG3518: Uncharacterized protein conserved in bacteria [Burkholderia ... gi\|67091937, gi\|... - gi\|67660474\|ref\|ZP_00457820.1\| Protein of unknown function DUF1316 [Burkholderia cenocepacia AU 1054... gi\|67663239, gi\|... - gi\|67663239\|ref\|ZP_00460522.1\| Protein of unknown function DUF1316 [Burkholderia cenocepacia HI2424]...	119.0	[0..3]	[135..5]
gi\|83719917, gi\|... - gi\|83719917\|ref\|YP_443468.1\| hypothetical protein BTH_I2961 [Burkholderia thailandensis E264], gi\|83... gi\|167621168 - gi\|167621168\|ref\|ZP_02389799.1\| hypothetical protein BthaB_32994 [Burkholderia thailandensis Bt4] gi\|167583009 - gi\|167583009\|ref\|ZP_02375883.1\| hypothetical protein BthaT_32993 [Burkholderia thailandensis TXDOH]	118.0	[0..3]	[135..5]
gi\|254253401, gi... - gi\|84360557\|ref\|ZP_00985255.1\| COG3518: Uncharacterized protein conserved in bacteria [Burkholderia ...	118.0	[0..3]	[135..5]
gi\|17431217 - gi\|17431217\|emb\|CAD17897.1\| hypothetical protein of unknown function duf1316 [Ralstonia solanacearum... gi\|17548967 - gi\|17548967\|ref\|NP_522307.1\| hypothetical protein RS01962 [Ralstonia solanacearum GMI1000]	118.0	[0..3]	[135..5]
gi\|67545692, gi\|... - gi\|67545692\|ref\|ZP_00423612.1\| Protein of unknown function DUF1316 [Burkholderia vietnamiensis G4], ...	117.0	[0..3]	[135..5]
gi\|52211127, gi\|... - gi\|53720713\|ref\|YP_109699.1\| hypothetical protein BPSL3104 [Burkholderia pseudomallei K96243], gi\|52...	117.0	[0..3]	[135..15]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREERLLERI RSLERDPSRR GGTDRGRLVD SILAHVRRII NTRRGSVPIA PDFGIPDMLD  60
   61 VLQSYPDSVR EIERSIRAAI QGFEPRLADV RVAFVPQEDD VLALRFAISA RLGSDGGAVC 120
  121 FETLVDTDGK VTVRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	2ia7A
Description:	No description for 2ia7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits