YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982296, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982296, gi|....

Description	E-value	Query Range	Subject Range
gi\|15025140, gi\|... - gi\|15895417\|ref\|NP_348766.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acet... gi\|25500687 - pir\|\|G97164 fusion of flagellar biosynthesis proteins FliR and FlhB [imported] - Clostridium acetobu...	195.0	[0..14]	[264..6]
gi\|33601553, gi\|... - gi\|33601553\|ref\|NP_889113.1\| flagellar biosynthetic protein [Bordetella bronchiseptica RB50], gi\|335...	187.0	[0..6]	[263..5]
gi\|33592490, gi\|... - gi\|33592490\|ref\|NP_880134.1\| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I], gi...	186.0	[0..6]	[263..5]
gi\|90411035, gi\|... - gi\|90411035\|ref\|ZP_01219049.1\| flagellar biosynthesis protein [Photobacterium profundum 3TCK], gi\|90...	184.0	[0..12]	[259..10]
gi\|73539699, gi\|... - gi\|73539699\|ref\|YP_300066.1\| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134], gi\|721...	183.0	[0..6]	[263..5]
gi\|46912553, gi\|... - gi\|54308127\|ref\|YP_129147.1\| flagellar biosynthesis protein FliR [Photobacterium profundum SS9], gi\|...	183.0	[0..12]	[259..10]
gi\|78195542, gi\|... - gi\|78224287\|ref\|YP_386034.1\| flagellar biosynthesis protein FliR [Geobacter metallireducens GS-15], ...	181.0	[0..1]	[264..1]
gi\|218321854, gi... - gi\|218708835\|ref\|YP_002416456.1\| flagellar biosynthesis protein FliR [Vibrio splendidus LGP32], gi\|2... gi\|86146124, gi\|... - gi\|86146124\|ref\|ZP_01064450.1\| flagellar biosynthesis protein [Vibrio sp. MED222], gi\|85836071\|gb\|EA...	179.0	[0..12]	[260..10]
gi\|84388123, gi\|... - gi\|84388123\|ref\|ZP_00991019.1\| flagellar biosynthesis protein [Vibrio splendidus 12B01], gi\|84377190...	178.0	[0..12]	[260..10]
gi\|4322009, gi\|2... - gi\|4322009\|gb\|AAD15912.1\| polar flagellar assembly protein FliR [Vibrio parahaemolyticus], gi\|288072... gi\|28899011, gi\|... - gi\|28899011\|ref\|NP_798616.1\| flagellar biosynthesis protein FliR [Vibrio parahaemolyticus RIMD 22106...	178.0	[0..12]	[260..10]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPLTTPFPT ANDVAFFTLV MGRMAGIFAA IPIFGGRRVP TPIKALLVFA MTMVCFPIIK  60
   61 EKMPQLPTDV LSLGFLMVQE VLVGVSLGLL SLIIFAAVEF AGQIVSVQIG LTIVTEFDPS 120
  121 QGGQLSIMSI ILEMLATLLF LSLGMHHIFI GALVQSYDVL PLGAWHM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [168-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGALLQFIVT TIGEVFVLAV RLAAPVMVTL LATSVMLGIM ARSFPQMNVF FVSMPLNIGI  60
   61 GFIVLGLSLP LFLHTVQGHF GLLDEQLKTM MKLMGKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits