YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982294, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982294, gi|....

Description	E-value	Query Range	Subject Range
gi\|28211318, gi\|... - gi\|28211318\|ref\|NP_782262.1\| flagellar biosynthesis protein FliP [Clostridium tetani E88], gi\|282037...	291.0	[0..8]	[254..8]
gi\|91785622, gi\|... - gi\|91785622\|ref\|YP_560828.1\| flagellar biosynthesis protein FliP [Burkholderia xenovorans LB400], gi...	289.0	[0..4]	[254..29]
gi\|124871414, gi... - gi\|84356431\|ref\|ZP_00981278.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Burkholderia... gi\|105891784, gi... - gi\|67657422\|ref\|ZP_00454800.1\| Flagellar transport protein FliP [Burkholderia cenocepacia AU 1054], ... gi\|170731411, gi... - gi\|170731411\|ref\|YP_001763358.1\| flagellar biosynthesis protein FliP [Burkholderia cenocepacia MC0-3... gi\|67667198, gi\|... - gi\|67667198\|ref\|ZP_00464428.1\| Flagellar transport protein FliP [Burkholderia cenocepacia HI2424], g...	286.0	[0..8]	[254..7]
gi\|78064698, gi\|... - gi\|78064698\|ref\|YP_367467.1\| flagellar biosynthesis protein FliP [Burkholderia sp. 383], gi\|77965443...	285.0	[0..9]	[254..8]
gi\|134137327, gi... - gi\|67546873\|ref\|ZP_00424782.1\| Flagellar transport protein FliP [Burkholderia vietnamiensis G4], gi\|...	285.0	[0..8]	[254..7]
gi\|71743098, gi\|... - gi\|71836268\|ref\|ZP_00676037.1\| Flagellar transport protein FliP [Pelobacter propionicus DSM 2379], g...	285.0	[0..28]	[255..53]
gi\|83589638, gi\|... - gi\|83589638\|ref\|YP_429647.1\| flagellar biosynthesis protein FliP [Moorella thermoacetica ATCC 39073]...	285.0	[0..25]	[254..88]
gi\|93453020, gi\|... - gi\|94266368\|ref\|ZP_01290067.1\| Flagellar transport protein FliP [delta proteobacterium MLMS-1], gi\|9...	283.0	[0..22]	[255..19]
FLIP_BUCAI - Flagellar biosynthetic protein fliP OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fliP PE=3 S... FLIP_BUCAI - Flagellar biosynthetic protein FliP OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) G... gi\|25403546 - gi\|25403546\|pir\|\|B84939 flagellar biosynthetic protein fliP [imported] - Buchnera sp. (strain APS)	282.0	[0..7]	[254..134]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGVPIFKRI PFIALCVILL TASLAAAAEP LALPSVSIGV GKATKPGDVS VVLQIFFLMT  60
   61 VLSLAPGLLM MTTSFTRIAV VLSFLRHAIG TQQAPPNQII IALSLFLTFF VMAPVWQQVN 120
  121 TQAIQPYRAA QITQDEALKR AVAPMRKFML SQTREKDLAL FLNLSKLPRP RTADDIPTLT 180
  181 LIPAFMISEL RTAFQIGFLI FIPFLVVDMV VASVLMSMGM MMLPPVMISL PFKILLFVLV 240
  241 DGWGLVIGSL IKSFG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	113.508638
Match:	PF00813.11
Description:	No description for PF00813.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits