YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982285, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982285, gi|....

Description	E-value	Query Range	Subject Range
gi\|109123809 - gi\|109123809\|ref\|XP_001113811.1\| PREDICTED: similar to epidermal growth factor receptor pathway subs...	106.0	[0..3]	[143..502]
EPS15L1 - epidermal growth factor receptor pathway substrate 15-like 1	105.0	[0..3]	[143..397]
gi\|76621154 - gi\|76621154\|ref\|XP_876634.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	104.0	[0..3]	[143..397]
gi\|26331586 - gi\|26331586\|dbj\|BAC29523.1\| unnamed protein product [Mus musculus]	103.0	[0..3]	[143..395]
gi\|78067886, gi\|... - gi\|78067886\|ref\|YP_370655.1\| flagellar biosynthesis chaperone FliJ-like protein [Burkholderia sp. 38...	102.0	[0..5]	[142..3]
gi\|49119498 - gi\|49119498\|gb\|AAH73619.1\| Eps15R protein [Xenopus laevis]	101.0	[0..3]	[143..396]
gi\|50761168 - gi\|50761168\|ref\|XP_418263.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	100.0	[0..3]	[143..392]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHKHGFQLQ QVLNYRKEVE KVKKLEFATA RHEFEHATDV LSRHEAEADR ARVEYNNKQA  60
   61 AGTTANELQL YADFFARKHM DIQFQRIEVD NLNRKMSEKR EDLMDAAKDK KALELLKEKQ 120
  121 MLAFRREMAE RERAFLDEMA LQKVAR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits