YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982278, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982278, gi|....

Description	E-value	Query Range	Subject Range
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	125.0	[0..7]	[135..1]
gi\|30138210, gi\|... - gi\|30248324\|ref\|NP_840394.1\| flagellar basal body rod protein FlgG [Nitrosomonas europaea ATCC 19718...	125.0	[0..7]	[135..1]
gi\|207090416 - gi\|207090416\|gb\|EDZ67687.1\| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27] gi\|254434083, gi... - gi\|254434083\|ref\|ZP_05047591.1\| flagellar basal-body rod protein FlgG [Nitrosococcus oceani AFC27], ... gi\|76884150, gi\|... - gi\|77165836\|ref\|YP_344361.1\| hypothetical protein Noc_2373 [Nitrosococcus oceani ATCC 19707], gi\|768...	123.0	[0..7]	[134..1]
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	122.0	[0..7]	[134..1]
gi\|52007861, gi\|... - gi\|74317650\|ref\|YP_315390.1\| flagellar basal body rod protein FlgG [Thiobacillus denitrificans ATCC ...	121.0	[0..7]	[135..1]
gi\|91776311, gi\|... - gi\|91776311\|ref\|YP_546067.1\| flagellar basal-body rod FlgG [Methylobacillus flagellatus KT], gi\|9171...	120.0	[0..7]	[135..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	120.0	[0..7]	[134..81]
gi\|36785272, gi\|... - gi\|37525843\|ref\|NP_929187.1\| flagellar basal-body rod protein FlgG (Distal rod protein) [Photorhabdu...	119.0	[0..7]	[135..1]
gi\|238785495, gi... - gi\|77957050\|ref\|ZP_00821117.1\| COG4786: Flagellar basal body rod protein [Yersinia bercovieri ATCC 4...	119.0	[0..7]	[135..1]
gi\|82410520, gi\|... - gi\|82702455\|ref\|YP_412021.1\| hypothetical protein Nmul_A1326 [Nitrosospira multiformis ATCC 25196], ...	119.0	[0..7]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVDSMFGTT INVLAKAVDL RARNHTMISA NLANAETPNY TPKALSFEKE LGAALKGNKT  60
   61 GSPATTHPRH IPLKGQAASV QSVEGTVIET PAPTPGRDNN GVELEAEMSR MAENQIMYNA 120
  121 SIQILTKKFE GMKYAIKGQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.896	f.14.1	Voltage-gated potassium channels
View	Download	0.893	f.14.1	Voltage-gated potassium channels
View	Download	0.589	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like
View	Download	0.555	a.29.2	Bromodomain
View	Download	0.547	a.29.2	Bromodomain
View	Download	0.507	a.2.5	Prefoldin
View	Download	0.504	a.24.9	alpha-catenin/vinculin
View	Download	0.503	a.24.2	Aspartate receptor, ligand-binding domain
View	Download	0.491	a.29.3	Acyl-CoA dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits