YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982269, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982269, gi|....

Description	E-value	Query Range	Subject Range
gi\|20091156, gi\|... - gi\|20091156\|ref\|NP_617231.1\| metallo-beta-lactamase [Methanosarcina acetivorans C2A], gi\|19916262\|gb...	126.0	[0..4]	[118..342]
gi\|106891330, gi... - gi\|148657071\|ref\|YP_001277276.1\| rhodanese domain-containing protein [Roseiflexus sp. RS-1], gi\|1485...	126.0	[0..19]	[118..47]
gi\|114778197, gi... - gi\|114778197\|ref\|ZP_01453069.1\| putative transferase/hydrolase [Mariprofundus ferrooxydans PV-1], gi...	125.0	[0..1]	[118..5]
gi\|55772221, gi\|... - gi\|55980808\|ref\|YP_144105.1\| phage shock protein E [Thermus thermophilus HB8], gi\|55772221\|dbj\|BAD70...	123.0	[0..13]	[118..34]
gi\|67932282, gi\|... - gi\|67932282\|ref\|ZP_00525429.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Solibact...	123.0	[0..18]	[117..286]
gi\|46196418, gi\|... - gi\|46198795\|ref\|YP_004462.1\| putative transferase/hydrolase [Thermus thermophilus HB27], gi\|46196418...	122.0	[0..13]	[118..34]
gi\|21229033, gi\|... - gi\|21229033\|ref\|NP_634955.1\| hydrolase [Methanosarcina mazei Go1], gi\|20907580\|gb\|AAM32627.1\| hydrol...	121.0	[0..4]	[118..341]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFMVTSLAAT ALAAPYRNIG SAEAKALLDK KRNVFLLDVR TPDEYRQARL AGSVLIPINE  60
   61 VERRIAQIPK GRPVLVYCAV GSRSGLVAGY LTQRGYGEVY NMHDGIVGWY RNGFPITR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1qxnA
Description:	Solution Structure of the 30 kDa Polysulfide-sulfur Transferase Homodimer from Wolinella Succinogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.05774816707958	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: