YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOC_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOC_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|114191474, gi... - gi\|115400439\|ref\|XP_001215808.1\| NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial prec...	234.0	[0..4]	[160..30]
gi\|70991843, gi\|... - gi\|70991843\|ref\|XP_750770.1\| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor [Aspergillus f... gi\|159124332 - gi\|159124332\|gb\|EDP49450.1\| NADH-ubiquinone oxidoreductase 304 kDa subunit precursor [Aspergillus fu...	230.0	[0..4]	[160..74]
gi\|67522543, gi\|... - gi\|67522543\|ref\|XP_659332.1\| hypothetical protein AN1728.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	228.0	[0..4]	[160..79]
gi\|134112874, gi... - gi\|50257628\|gb\|EAL20333.1\| hypothetical protein CNBF1440 [Cryptococcus neoformans var. neoformans B-... gi\|57227644, gi\|... - gi\|58268506\|ref\|XP_571409.1\| NADH-ubiquinone oxidoreductase 30.4 kDa subunit [Cryptococcus neoforman...	227.0	[0..2]	[160..72]
gi\|46097031, gi\|... - gi\|71006324\|ref\|XP_757828.1\| hypothetical protein UM01681.1 [Ustilago maydis 521], ref\|XP_399296.1\| ...	227.0	[0..4]	[160..182]
gi\|49650761, gi\|... - gi\|50554965\|ref\|XP_504891.1\| YALI0F02123p [Yarrowia lipolytica], gi\|49650761\|emb\|CAG77693.1\| Yl NUGM... gi\|49650761, gi\|... - gi\|6689654\|emb\|CAB65522.1\| NUGM protein [Yarrowia lipolytica], gi\|49650761\|emb\|CAG77693.1\| YALI0F021...	225.0	[0..2]	[160..69]
gi\|50748097 - gi\|50748097\|ref\|XP_421103.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 3, 3...	224.0	[0..7]	[161..189]
NUOC_MAGSA - NADH-quinone oxidoreductase subunit C OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN...	224.0	[0..1]	[160..1]
gi\|169769188 - gi\|169769188\|ref\|XP_001819064.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766922 - gi\|83766922\|dbj\|BAE57062.1\| unnamed protein product [Aspergillus oryzae]	224.0	[0..4]	[160..74]
NUOC_GEOMG - NADH-quinone oxidoreductase subunit C OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM ...	224.0	[0..1]	[162..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENNRAVIK LKEKFAASIL DVREFRGEVT VTVAREKVVD ICRFLKESLQ YNLCTDVTAV  60
   61 DYLGKQEPRF MVVYNLYSIP NKDRLRLKAG VPDADCSIDT VSCVWNSANW LEREVYDLMG 120
  121 VQFNNHPDLR RILMTDDWVG HPLRKDYPLQ GPDREPYKGR LS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2fug5
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits