YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOB_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOB_GEOSL.

Description	E-value	Query Range	Subject Range
NDHK_NOSP7 - NAD(P)H-quinone oxidoreductase subunit K OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=nd...	229.0	[0..3]	[170..24]
gi\|108744252 - gi\|108744252\|gb\|ABG02401.1\| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus atmophytic...	228.0	[0..3]	[170..63]
NDHK_CHAGL - NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chaetosphaeridium globosum GN=ndhK PE=3 S...	228.0	[0..5]	[170..32]
NDHK_HELAN - NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Helianthus annuus GN=ndhK PE=3 SV=1	227.0	[0..7]	[169..13]
NDHK_LACSA - NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lactuca sativa GN=ndhK PE=3 SV=1	227.0	[0..4]	[169..10]
NDHK_NEPOL - NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis olivacea GN=ndhK PE=3 SV=1	226.0	[0..3]	[170..21]
NUKC_ANAVA - (Q9XBL7) NAD(P)H-quinone oxidoreductase subunit K (EC 1.6.5.-) (NAD(P)H dehydrogenase I, subunit K) ... NDHK_ANAVT - NAD(P)H-quinone oxidoreductase subunit K OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=nd...	226.0	[0..2]	[170..23]
gi\|57032922, gi\|... - gi\|57032922\|gb\|AAH88820.1\| LOC496303 protein [Xenopus laevis], gi\|148236498\|ref\|NP_001088930.1\| hypo...	226.0	[0..5]	[161..23]
NDHK_NOSS1 - NAD(P)H-quinone oxidoreductase subunit K OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhK PE=3 SV... gi\|25299004 - pir\|\|AB2286 NADH dehydrogenase chain K ndhK [imported] - Nostoc sp. (strain PCC 7120)	226.0	[0..2]	[170..23]
NUOB_GEOMG - NADH-quinone oxidoreductase subunit B OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM ...	226.0	[0..1]	[170..1]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDQPLGDN FITTSLDSLV NWARKSSIWP MTFGLACCAI EMMATGASHN DLDRFGIIFR  60
   61 ASPRQSDCII IAGTVTKKML PVIKTVYEQM PEPKWVVAMG ACACSGGVFD TYSVVQGIDT 120
  121 ALPVDVYIPG CPPRPEALLY GLLKLQDKIM KDKNSFGSTI GLGERLESAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2fug6
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	6.8419158179039	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	6.65949892399481	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	6.46155212492129	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	6.2178143146395	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.76455755583616	bayes_pls_golite062009
oxidoreductase activity	2.66146298873621	bayes_pls_golite062009
catalytic activity	1.78400897294986	bayes_pls_golite062009
binding	0.246886150183413	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: