YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOA1_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOA1_GEOSL.

Description	E-value	Query Range	Subject Range
gi\|78695248, gi\|... - gi\|78695248\|ref\|ZP_00859760.1\| similar to NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Bradyr...	147.0	[0..1]	[118..47]
gi\|110829209, gi... - gi\|121609762\|ref\|YP_997569.1\| NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 [Verminephrobact...	142.0	[0..2]	[118..20]
gi\|114327966, gi... - gi\|114327966\|ref\|YP_745123.1\| NADH-quinone oxidoreductase chain A [Granulibacter bethesdensis CGDNIH...	142.0	[0..1]	[118..4]
gi\|85825936, gi\|... - gi\|86137601\|ref\|ZP_01056178.1\| NADH dehydrogenase alpha subunit [Roseobacter sp. MED193], gi\|8582593...	141.0	[0..1]	[118..4]
gi\|110680472, gi... - gi\|110680472\|ref\|YP_683479.1\| NADH dehydrogenase subunit A [Roseobacter denitrificans OCh 114], gi\|1...	141.0	[0..1]	[118..4]
gi\|99080582, gi\|... - gi\|99080582\|ref\|YP_612736.1\| NADH dehydrogenase subunit A [Silicibacter sp. TM1040], gi\|99036862\|gb\|...	140.0	[0..1]	[118..4]
gi\|83953914, gi\|... - gi\|83953914\|ref\|ZP_00962635.1\| NADH dehydrogenase alpha subunit [Sulfitobacter sp. NAS-14.1], gi\|838... gi\|83942675, gi\|... - gi\|83942675\|ref\|ZP_00955136.1\| NADH dehydrogenase alpha subunit [Sulfitobacter sp. EE-36], gi\|838467...	140.0	[0..1]	[118..4]
gi\|115422127, gi... - gi\|187477541\|ref\|YP_785565.1\| NADH dehydrogenase I chain A [Bordetella avium 197N], gi\|115422127\|emb...	140.0	[0..2]	[118..3]
gi\|114542918, gi... - gi\|114764718\|ref\|ZP_01443903.1\| NADH dehydrogenase alpha subunit [Roseovarius sp. HTCC2601], gi\|1145...	139.0	[0..1]	[118..4]
gi\|20198300 - gi\|20198300\|gb\|AAM15514.1\| hypothetical protein [Arabidopsis thaliana]	139.0	[0..1]	[118..359]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVYLPIIV LVAVAVIFGL ASLTFSSLIG QKKPSAVKLA PYECGCEPVG SARERFSVKF  60
   61 YIIAMLFILF DIEAVFMYPW SVLFKRLGIF GVVEMGLFIV ILFVGYIYVW KKGALEWE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	46.657577
Match:	PF00507.10
Description:	No description for PF00507.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits