YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982198, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982198, gi|....

Description	E-value	Query Range	Subject Range
gi\|28805118, gi\|... - gi\|28896910\|ref\|NP_796515.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 22106... gi\|28805118 - gi\|28805118\|dbj\|BAC58399.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 221063... gi\|149746473, gi... - gi\|153839996\|ref\|ZP_01992663.1\| general secretion pathway protein G [Vibrio parahaemolyticus AQ3810]...	144.0	[0..1]	[147..1]
gi\|116184927, gi... - gi\|75855650\|ref\|ZP_00763295.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio sp. Ex25...	144.0	[0..1]	[147..1]
gi\|91190218, gi\|... - gi\|91224972\|ref\|ZP_01260231.1\| general secretion pathway protein G [Vibrio alginolyticus 12G01], gi\|...	144.0	[0..1]	[147..1]
gi\|3297910 - gi\|3297910\|emb\|CAA56982.1\| xcpT [Pseudomonas putida]	143.0	[0..1]	[146..1]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	143.0	[0..5]	[146..13]
tr\|E4R6I8\|E4R6I8... - General secretion pathway protein G OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_1099 PE=4 SV=1 tr\|I7C394\|I7C394... - General secretion pathway protein G OS=Pseudomonas putida (strain DOT-T1E) GN=outG PE=4 SV=1 gi\|148546333, gi... - gi\|82738556\|ref\|ZP_00901386.1\| General secretion pathway protein G [Pseudomonas putida F1], gi\|82714...	142.0	[0..1]	[146..1]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	142.0	[0..5]	[146..2]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	142.0	[0..5]	[144..16]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	141.0	[0..4]	[145..15]
gi\|26987785, gi\|... - gi\|26987785\|ref\|NP_743210.1\| general secretion pathway protein G [Pseudomonas putida KT2440], gi\|249...	141.0	[0..1]	[146..8]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNTLRNRRG FTLIEIMVVI AILALLAALV GPRIIGRSDD AKVADAKVQI KNLETALKLY  60
   61 KLDSGTYPST EQGLMALVAA PTVGTIPKNY RSEGYLESKQ VPKDPWGNDF VYLSPGEHGD 120
  121 YDLYSFGADG VKGGEGKNAD IESWNLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	8.7545256796234	bayes_pls_golite062009
transporter activity	2.74044424168852	bayes_pls_golite062009
substrate-specific transporter activity	2.55698329173896	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: