YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982196, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982196, gi|....

Description	E-value	Query Range	Subject Range
gi\|37197142, gi\|... - gi\|37678403\|ref\|NP_933012.1\| type II secretory pathway, pseudopilin EpsI [Vibrio vulnificus YJ016], ...	128.0	[0..4]	[118..29]
GSPI_AERHY - Type II secretion system protein I OS=Aeromonas hydrophila GN=exeI PE=3 SV=1	125.0	[0..4]	[118..1]
GSPI_VIBCH - Type II secretion system protein I OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba ... gi\|227082842, gi... - gi\|227082842\|ref\|YP_002811393.1\| general secretion pathway protein I [Vibrio cholerae M66-2], gi\|227... gi\|153828353, gi... - gi\|153828353\|ref\|ZP_01981020.1\| general secretion pathway protein I [Vibrio cholerae 623-39], gi\|148... gi\|153825529, gi... - gi\|153825529\|ref\|ZP_01978196.1\| general secretion pathway protein I [Vibrio cholerae MZO-2], gi\|1497... gi\|121586627, gi... - gi\|121586627\|ref\|ZP_01676412.1\| general secretion pathway protein I [Vibrio cholerae 2740-80], gi\|12... gi\|153221063, gi... - gi\|153221063\|ref\|ZP_01952118.1\| general secretion pathway protein I [Vibrio cholerae MAK 757], gi\|12... gi\|153802920, gi... - gi\|153802920\|ref\|ZP_01957506.1\| general secretion pathway protein I [Vibrio cholerae MZO-3], gi\|1538... gi\|254846970, gi... - gi\|75830653\|ref\|ZP_00759927.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|153817442, gi... - gi\|153817442\|ref\|ZP_01970109.1\| general secretion pathway protein I [Vibrio cholerae NCTC 8457], gi\|... gi\|227119164, gi... - gi\|75827971\|ref\|ZP_00757406.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|126521227, gi... - gi\|153821295\|ref\|ZP_01973962.1\| general secretion pathway protein I [Vibrio cholerae B33], gi\|126521... gi\|116217923, gi... - gi\|75824761\|ref\|ZP_00754207.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|75820628, gi\|... - gi\|75820628\|ref\|ZP_00750671.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|121630846, gi... - gi\|75815851\|ref\|ZP_00746341.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio cholerae... gi\|150424105, gi... - gi\|254285923\|ref\|ZP_04960885.1\| general secretion pathway protein I [Vibrio cholerae AM-19226], gi\|1... GSPI_VIBCH - General secretion pathway protein I OS=Vibrio cholerae GN=epsI PE=3 SV=1	125.0	[0..4]	[117..2]
gi\|251788925, gi... - gi\|251788925\|ref\|YP_003003646.1\| general secretion pathway protein I [Dickeya zeae Ech1591], gi\|2475... GSPI_DICCH - Type II secretion system protein I OS=Dickeya chrysanthemi GN=outI PE=3 SV=1	123.0	[0..4]	[118..1]
gi\|48861478, gi\|... - gi\|90023215\|ref\|YP_529042.1\| general secretion pathway protein I [Saccharophagus degradans 2-40], gi...	123.0	[0..1]	[118..2]
gi\|89049780, gi\|... - gi\|89074492\|ref\|ZP_01160969.1\| putative type II secretory pathway, pseudopilin EpsI [Photobacterium ...	122.0	[0..4]	[117..2]
gi\|90437786, gi\|... - gi\|90581090\|ref\|ZP_01236890.1\| putative type II secretory pathway, pseudopilin EpsI [Vibrio angustum...	122.0	[0..4]	[117..2]
gi\|78689148, gi\|... - gi\|78689148\|ref\|ZP_00853813.1\| General secretion pathway protein I [Shewanella sp. MR-7], gi\|7851154... gi\|82495886, gi\|... - gi\|82495886\|ref\|ZP_00881459.1\| General secretion pathway protein I [Shewanella sp. MR-4], gi\|8240619...	120.0	[0..6]	[118..4]
gi\|59481177, gi\|... - gi\|59713076\|ref\|YP_205852.1\| general secretion pathway protein I [Vibrio fischeri ES114], gi\|5948117...	120.0	[0..4]	[117..9]
gi\|117610946, gi... - gi\|78685481\|ref\|ZP_00850259.1\| General secretion pathway protein I [Shewanella sp. ANA-3], gi\|785068...	120.0	[0..6]	[118..4]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTIGARGFT LLEVMIAVAI IAGVVFTVIG VVNNHLAVAG RDRDEGVAVL LGRQMLDDLD  60
   61 TRQDIPEKSN GTFAPVRPDY AWVMTSTATQ VPGFRKVTVA ISWDNARRTV SLVRYVAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2hi2A
Description:	No description for 2hi2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits