YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982179, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	76 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982179, gi|....

Description	E-value	Query Range	Subject Range
gi\|7515025, gi\|5... - pir\|\|F75031 hydrogenase expression/formation protein (hypc) PAB7315 - Pyrococcus abyssi (strain Orsa... gi\|14521441, gi\|... - gi\|5458660\|emb\|CAB50147.1\| hypC hydrogenase expression/formation protein [Pyrococcus abyssi GE5], gi...	98.0	[0..1]	[73..1]
gi\|186680890, gi... - gi\|53688951\|ref\|ZP_00112364.2\| COG0298: Hydrogenase maturation factor [Nostoc punctiforme PCC 73102]...	97.0	[0..1]	[74..1]
HYPC_HELHP - Hydrogenase expression/formation protein hypC OS=Helicobacter hepaticus GN=hypC PE=3 SV=1 HYPC_HELHP - Hydrogenase expression/formation protein HypC OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN...	96.0	[0..1]	[75..1]
gi\|75910799, gi\|... - gi\|75910799\|ref\|YP_325095.1\| hydrogenase expression/formation protein (HUPF/HYPC) [Anabaena variabil...	95.0	[0..1]	[75..1]
gi\|20093667, gi\|... - gi\|20093667\|ref\|NP_613514.1\| hydrogenase maturation factor [Methanopyrus kandleri AV19], gi\|19886542...	95.0	[0..1]	[75..1]
gi\|57641936, gi\|... - gi\|57641936\|ref\|YP_184414.1\| hydrogenase expression/formation protein HypC [Thermococcus kodakarensi... gi\|152149562, gi... - gi\|58430572\|dbj\|BAD89077.1\| Hydrogenase expression/formation protein HypC [Thermococcus kodakaraensi...	95.0	[0..1]	[74..1]
gi\|222823794, gi... - gi\|57241261\|ref\|ZP_00369208.1\| hydrogenase assembly chaperone hypC/hupF [Campylobacter lari RM2100],...	95.0	[0..1]	[73..1]
gi\|254779504, gi... - gi\|254779504\|ref\|YP_003057610.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Helicobacter ... gi\|4155405, gi\|1... - gi\|4155405\|gb\|AAD06414.1\| Hydrogenase expression/formation protein [Helicobacter pylori J99], gi\|156... gi\|7447445 - pir\|\|G71883 hydrogenase expression/formation protein - Helicobacter pylori (strain J99) gi\|210135088, gi... - gi\|210135088\|ref\|YP_002301527.1\| hydrogenase expression/formation protein HypC [Helicobacter pylori ... gi\|107837077, gi... - gi\|108563304\|ref\|YP_627620.1\| hydrogenase expression/formation protein HypC [Helicobacter pylori HPA...	95.0	[0..1]	[75..1]
gi\|76259436, gi\|... - gi\|76259436\|ref\|ZP_00767085.1\| Hydrogenase expression/formation protein (HUPF/HYPC) [Chloroflexus au... gi\|222526226, gi... - gi\|222526226\|ref\|YP_002570697.1\| hydrogenase assembly chaperone hypC/hupF [Chloroflexus sp. Y-400-fl... gi\|53799254 - ref\|ZP_00359348.1\| COG0298: Hydrogenase maturation factor [Chloroflexus aurantiacus]	95.0	[0..1]	[75..1]
gi\|18892537, gi\|... - gi\|18976920\|ref\|NP_578277.1\| hydrogenase expression/formation protein [Pyrococcus furiosus DSM 3638]...	95.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCLGVPMQVV AVGEGEVVAE IDGVRKEASL MLLDEEVRVG DFVIVHAGFA ISKLDEEDAQ  60
   61 ETLRLMREVF RPEDMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	2z1cA
Description:	No description for 2z1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits