YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982177, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	254 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982177, gi|....

Description	E-value	Query Range	Subject Range
gi\|68550549, gi\|... - gi\|68550549\|ref\|ZP_00589995.1\| Hydrogenase accessory protein HypB [Pelodictyon phaeoclathratiforme B...	177.0	[0..1]	[249..1]
gi\|119353904, gi... - gi\|67935877\|ref\|ZP_00528893.1\| Hydrogenase accessory protein HypB [Chlorobium phaeobacteroides DSM 2...	176.0	[0..1]	[250..1]
gi\|24935222, gi\|... - gi\|75910804\|ref\|YP_325100.1\| hydrogenase accessory protein HypB [Anabaena variabilis ATCC 29413], gi...	175.0	[0..1]	[250..1]
gi\|17228195, gi\|... - gi\|17228195\|ref\|NP_484743.1\| hydrogenase expression/formation protein [Nostoc sp. PCC 7120], gi\|1713... gi\|25529708 - pir\|\|AB1894 hydrogenase expression/formation protein [imported] - Nostoc sp. (strain PCC 7120)	173.0	[0..1]	[250..1]
gi\|52425518, gi\|... - gi\|52425518\|ref\|YP_088655.1\| hydrogenase nickel incorporation protein HypB [Mannheimia succiniciprod...	171.0	[0..1]	[247..1]
gi\|23130555, gi\|... - gi\|23130555\|ref\|ZP_00112368.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|12232079 - gi\|12232079\|gb\|AAG49381.1\|AF325724_4 HypB-like protein [Nostoc punctiforme]	170.0	[0..1]	[249..1]
gi\|110599830, gi... - gi\|222056300\|ref\|YP_002538662.1\| hydrogenase accessory protein HypB [Geobacter sp. FRC-32], gi\|22156...	169.0	[0..1]	[254..1]
gi\|189500694, gi... - gi\|67938159\|ref\|ZP_00530688.1\| Hydrogenase accessory protein HypB [Chlorobium phaeobacteroides BS1],...	168.0	[0..1]	[249..1]
gi\|74276097, gi\|... - gi\|75434105\|ref\|ZP_00733203.1\| Ni2+-binding GTPase involved in regulation of expression and maturati...	168.0	[0..1]	[245..1]
gi\|110596782, gi... - gi\|110596782\|ref\|ZP_01385072.1\| hydrogenase accessory protein HypB [Chlorobium ferrooxidans DSM 1303...	168.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTTCGCETG SHHHHHEHGH GHSHSHGHTH DDERESRKIA VETDILSRNN RFAADNRALF  60
   61 AKKGVFVLNL VSSPGSGKTT TLERTLGDLS DRYRCAVIEG DQQTDNDAQR IAATGVPARQ 120
  121 INTGAGCHLD AHMVGHAAEE FDLDALDLLL VENVGNLVCP ASFDLGEHHK VVVLSVTEGE 180
  181 DKPLKYPNMF HAADVMLLNK IDLLPYVDFD VEKCLEMARR VSPGITIFQV SSRTGEGMDA 240
  241 WYAWLADRIA AVKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits