YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982169, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982169, gi|....

Description	E-value	Query Range	Subject Range
gi\|150964555, gi... - gi\|94415031\|ref\|ZP_01294880.1\| hypothetical protein PaerP_01003139 [Pseudomonas aeruginosa PA7], gi\|...	136.0	[0..9]	[163..6]
gi\|49081072 - gi\|49081072\|gb\|AAT50090.1\| PA1464 [synthetic construct]	136.0	[0..9]	[163..6]
gi\|88773938, gi\|... - gi\|88794813\|ref\|ZP_01110518.1\| chemotaxis protein CheW [Alteromonas macleodii 'Deep ecotype'], gi\|88...	136.0	[0..12]	[163..13]
gi\|78195711, gi\|... - gi\|78224456\|ref\|YP_386203.1\| CheW protein [Geobacter metallireducens GS-15], gi\|78195711\|gb\|ABB33478...	136.0	[0..1]	[164..1]
gi\|83647830, gi\|... - gi\|83647830\|ref\|YP_436265.1\| chemotaxis signal transduction protein [Hahella chejuensis KCTC 2396], ...	136.0	[0..10]	[163..9]
gi\|11277547, gi\|... - gi\|3721576\|dbj\|BAA33555.1\| CheW [Pseudomonas aeruginosa], pir\|\|T46620 chemotaxis protein cheW [impor... gi\|32041508, gi\|... - gi\|32041508\|ref\|ZP_00139091.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|9947417, gi\|1... - gi\|9947417\|gb\|AAG04853.1\|AE004576_2 probable purine-binding chemotaxis protein [Pseudomonas aerugino... gi\|107100898 - gi\|107100898\|ref\|ZP_01364816.1\| hypothetical protein PaerPA_01001928 [Pseudomonas aeruginosa PACS2] gi\|84328379, gi\|... - gi\|84328379\|ref\|ZP_00976386.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|194545547, gi... - gi\|84321854\|ref\|ZP_00970207.1\| COG0835: Chemotaxis signal transduction protein [Pseudomonas aerugino... gi\|218892663, gi... - gi\|218892663\|ref\|YP_002441532.1\| putative purine-binding chemotaxis protein [Pseudomonas aeruginosa ...	136.0	[0..9]	[163..6]
gi\|37199389, gi\|... - gi\|37680641\|ref\|NP_935250.1\| chemotaxis signal transduction protein [Vibrio vulnificus YJ016], gi\|37... gi\|27361451, gi\|... - gi\|27365304\|ref\|NP_760832.1\| chemotaxis signal transduction protein [Vibrio vulnificus CMCP6], gi\|27...	135.0	[0..2]	[163..4]
gi\|84377202, gi\|... - gi\|84388135\|ref\|ZP_00991031.1\| Chemotaxis signal transduction protein [Vibrio splendidus 12B01], gi\|...	134.0	[0..2]	[163..4]
gi\|218321866, gi... - gi\|218708847\|ref\|YP_002416468.1\| Chemotaxis protein cheW [Vibrio splendidus LGP32], gi\|218321866\|emb... gi\|86146112, gi\|... - gi\|86146112\|ref\|ZP_01064438.1\| Chemotaxis signal transduction protein [Vibrio sp. MED222], gi\|858360...	134.0	[0..2]	[163..4]
gi\|77953771, gi\|... - gi\|77953771\|ref\|ZP_00818176.1\| CheW-like protein [Marinobacter aquaeolei VT8], gi\|77867368\|gb\|EAO986...	134.0	[0..1]	[163..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNALQTRVD ETRNELIQLV SFKLEEEEYG VNVLKVREII RMPSITRVPN TPHYVEGVIN  60
   61 LRGKVIPIIS MRKRFGLPEG ENSSQTRIMV MDMEGELMGF VVDAVSEVIR ISESEIQPPP 120
  121 AVVNSAVEQE CLSGVINQTE RLLFFLDLEK LITQDERRLF SGMI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2ho9A
Description:	No description for 2ho9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits