YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982167, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982167, gi|....

Description	E-value	Query Range	Subject Range
gi\|48844031, gi\|... - gi\|78224458\|ref\|YP_386205.1\| MCP methyltransferase, CheR-type [Geobacter metallireducens GS-15], gi\|...	328.0	[0..1]	[277..1]
gi\|78356616, gi\|... - gi\|78356616\|ref\|YP_388065.1\| MCP methyltransferase, CheR-type [Desulfovibrio desulfuricans subsp. de...	317.0	[0..2]	[277..16]
gi\|88917431, gi\|... - gi\|88935805\|ref\|ZP_01141430.1\| MCP methyltransferase, CheR-type [Geobacter uraniumreducens Rf4], gi\|...	316.0	[0..1]	[277..1]
gi\|39996245, gi\|... - gi\|39996245\|ref\|NP_952196.1\| chemotaxis protein methyltransferase CheR [Geobacter sulfurreducens PCA...	316.0	[0..2]	[277..18]
gi\|19917597, gi\|... - gi\|20092349\|ref\|NP_618424.1\| chemotaxis protein [Methanosarcina acetivorans C2A], gi\|19917597\|gb\|AAM...	313.0	[0..5]	[277..286]
gi\|73669676, gi\|... - gi\|73669676\|ref\|YP_305691.1\| hypothetical protein Mbar_A2183 [Methanosarcina barkeri str. Fusaro], g...	313.0	[0..11]	[277..214]
gi\|46449900, gi\|... - gi\|46580481\|ref\|YP_011289.1\| chemotaxis protein methyltransferase [Desulfovibrio vulgaris subsp. vul...	312.0	[0..1]	[277..15]
gi\|120602199, gi... - gi\|120602199\|ref\|YP_966599.1\| protein-glutamate O-methyltransferase [Desulfovibrio vulgaris subsp. v... gi\|241878824, gi... - gi\|241908771\|ref\|ZP_04793333.1\| MCP methyltransferase, CheR-type [Desulfovibrio vulgaris RCH1], gi\|2...	312.0	[0..1]	[277..14]

Back

Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSDKDFEI LRDFIYNHCG MYFHASKKYF LESRIARRLE ATKCSDIHGY LGHLKGGVGK  60
   61 AEELTKLLNE ITTNETCFFR NPPQLKALEN VFLPEIVATK GKIGFRKIRI WSAGSSSGEE 120
  121 AYTMAMMLLE KRSTILKDWI IEIVGTDISE SVLAQAREGI YNSYSVRNTP DFYLKKYFRE 180
  181 ETGGRFLLSP DVKKLVSFSH LNLYEDSKMV FMKSFDFIFC ANVLIYFDLA SKTKVVQHFY 240
  241 NNLQPYGYFF VGQSESLHGV NDKFKTVHFP GGFAYKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.09691
Match:	1af7A
Description:	CHER FROM SALMONELLA TYPHIMURIUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.05991383541555	bayes_pls_golite062009
methyltransferase activity	1.04943568976829	bayes_pls_golite062009
O-methyltransferase activity	0.85422125054835	bayes_pls_golite062009
protein-glutamate O-methyltransferase activity	0.5118916412645	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.414568039011584	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: