YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982131, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982131, gi|....

Description	E-value	Query Range	Subject Range
gi\|72397954, gi\|... - gi\|73670792\|ref\|YP_306807.1\| flavoredoxin Flr [Methanosarcina barkeri str. Fusaro], gi\|72397954\|gb\|A...	211.0	[0..1]	[187..1]
gi\|20091133, gi\|... - gi\|20091133\|ref\|NP_617208.1\| flavoredoxin Flr [Methanosarcina acetivorans C2A], gi\|19916236\|gb\|AAM05...	210.0	[0..1]	[187..1]
gi\|78193910, gi\|... - gi\|78222655\|ref\|YP_384402.1\| flavin reductase-like, FMN-binding [Geobacter metallireducens GS-15], g...	203.0	[0..1]	[189..1]
gi\|221564001, gi... - gi\|222054712\|ref\|YP_002537074.1\| flavin reductase domain protein FMN-binding [Geobacter sp. FRC-32],...	197.0	[0..1]	[189..1]
gi\|21229018, gi\|... - gi\|21229018\|ref\|NP_634940.1\| flavoredoxin [Methanosarcina mazei Go1], gi\|20907563\|gb\|AAM32612.1\| fla...	195.0	[0..1]	[186..1]
gi\|71740746, gi\|... - gi\|71838708\|ref\|ZP_00678465.1\| Flavin reductase-like [Pelobacter propionicus DSM 2379], gi\|71740746\|...	194.0	[0..1]	[188..1]
gi\|95133203, gi\|... - gi\|95930723\|ref\|ZP_01313456.1\| flavin reductase-like, FMN-binding [Desulfuromonas acetoxidans DSM 68...	193.0	[0..1]	[189..1]
gi\|67918423, gi\|... - gi\|67918423\|ref\|ZP_00512021.1\| Flavin reductase-like [Chlorobium limicola DSM 245], gi\|67783896\|gb\|E...	189.0	[0..1]	[188..12]
gi\|77543779, gi\|... - gi\|77917696\|ref\|YP_355511.1\| flavoredoxin [Pelobacter carbinolicus DSM 2380], gi\|77543779\|gb\|ABA8734...	188.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQSLGARTL LVPTPVLMVG TYGPTGTPNL MNAAWGGICC SDPPCVTVSV RTSRLTYDNI  60
   61 VQRKAFTVSV ANEATMVEAD YVGIASGRDA DKFAVAGLTH VAGEYVDAPY AEEFPLVLEC 120
  121 RLLHTQELGL HTQFIGEIVD VKADEAILGE DGLPDILKIR PLVYDTAHKG YHAVGQLVGK 180
  181 AFSAGKKLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2d5mA
Description:	No description for 2d5mA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits