YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995355, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995355, gi|....

Description	E-value	Query Range	Subject Range
gi\|14520782, gi\|... - gi\|5457998\|emb\|CAB49488.1\| Glycosyltransferase [Pyrococcus abyssi GE5], gi\|14520782\|ref\|NP_126257.1\|... gi\|7445533, gi\|5... - pir\|\|A75176 dolichyl-phosphate mannose synthase related protein PAB1981 - Pyrococcus abyssi (strain ...	167.0	[0..1]	[219..1]
gi\|78194150, gi\|... - gi\|78222895\|ref\|YP_384642.1\| glycosyl transferase family protein [Geobacter metallireducens GS-15], ...	166.0	[0..1]	[220..1]
gi\|5042285, gi\|2... - gi\|5042285\|emb\|CAB44539.1\| putative bi-functional transferase/deacetylase [Streptomyces coelicolor A... gi\|7480519 - pir\|\|T34632 probable bi-functional transferase/deacetylase - Streptomyces coelicolor	162.0	[0..3]	[219..389]
gi\|18977978, gi\|... - gi\|18977978\|ref\|NP_579335.1\| dolichol-phosphate mannose synthase [Pyrococcus furiosus DSM 3638], gi\|...	160.0	[0..2]	[218..6]
gi\|29831372, gi\|... - gi\|29831372\|ref\|NP_826006.1\| polysaccharide deacetylase/glycosyl transferase [Streptomyces avermitil...	159.0	[0..3]	[219..436]
gi\|67921095, gi\|... - gi\|67921095\|ref\|ZP_00514614.1\| Glycosyl transferase, family 2 [Crocosphaera watsonii WH 8501], gi\|67...	157.0	[0..1]	[219..1]
gi\|14591374, gi\|... - gi\|3258025\|dbj\|BAA30708.1\| 215aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591374\|... gi\|7430310 - pir\|\|D71038 hypothetical protein PH1596 - Pyrococcus horikoshii	157.0	[0..2]	[219..6]
gi\|91203621 - gi\|91203621\|emb\|CAJ71274.1\| similar to family 2 glycosyltransferase SpsQ [Candidatus Kuenenia stuttg...	157.0	[0..2]	[218..4]
gi\|163849176, gi... - gi\|76261309\|ref\|ZP_00768924.1\| Glycosyl transferase, family 2 [Chloroflexus aurantiacus J-10-fl], gi... gi\|222451032, gi... - gi\|222527153\|ref\|YP_002571624.1\| glycosyl transferase family 2 [Chloroflexus sp. Y-400-fl], gi\|22245...	155.0	[0..3]	[218..22]
gi\|57640299, gi\|... - gi\|57640299\|ref\|YP_182777.1\| dolichol-phosphate mannosyltransferase [Thermococcus kodakarensis KOD1]...	155.0	[0..1]	[218..5]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYCIIIPAY NAARTLPAVV REVLGLGMPC LVVDDGSTDG TSATVEGLGV HLLRHDGNRG  60
   61 KGAALRTGFE WALAHGYSGV VTLDADGQHD PTAIPLLAAT ARERNVDILI ASRDTQFREM 120
  121 AGLRSVWNRF GVWCMRKRTG FTITDSQSGF RWYSARLLKG VSLEASGYHL EMEILMKAWR 180
  181 GGFAIDSLPV AARVADGRAT SHFRPVRDTW NICMTFLRHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits