YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995350, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995350, gi|....

Description	E-value	Query Range	Subject Range
gi\|113477277, gi... - gi\|71673902\|ref\|ZP_00671650.1\| Beta-ketoacyl synthase:Acyl transferase region:Phosphopantetheine-bin...	329.0	[0..2]	[277..544]
gi\|46486682 - gi\|46486682\|gb\|AAS98783.1\| JamL [Lyngbya majuscula]	328.0	[0..2]	[277..581]
gi\|75703915, gi\|... - gi\|75910190\|ref\|YP_324486.1\| Short-chain dehydrogenase/reductase SDR [Anabaena variabilis ATCC 29413...	318.0	[0..2]	[277..572]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICFMFPGQP LAPPVEFPED ADFEAIALLT RQRASFDLHT FSWTGEPSSD TVALQAYGVA  60
   61 MGLYRTRRLR AEGIAPRLIA EHSMGIYPAL AAAGALDEGD ALELAVRLGR TMAAMGRQRT 120
  121 YALGCMVGLT LEPLLVIAEN NGVYLANHNT SRHFLLAGER GAMEDACAEA LARGAFSARL 180
  181 FPCDAPLHTP LMAEVAEELA AVAGDYRYRE PSVPLVDHID QDFLAAADLP VFMVRDLMEP 240
  241 VRWERTYRAL RAAGVDRLYE VGAGDSLRKY NRWIESERGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	2g1hA
Description:	No description for 2g1hA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits