YRC Public Data Repository - Protein Structure Prediction

Protein:	COXX_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COXX_GEOSL.

Description	E-value	Query Range	Subject Range
3825.m02509, 128... - /numExons=12 /strand=- /begin=98461 /end=104446 /seqFile=euttg.scaffolds.fasta /startCodon=0 /coords... gi\|89295687, gi\|... - gi\|89295687\|gb\|EAR93675.1\| 4-hydroxybenzoate polyprenyl transferase family protein [Tetrahymena ther...	197.0	[0..4]	[268..978]
Coq2-PA - The gene Coenzyme Q biosynthesis protein 2 is referred to in FlyBase by the symbol Dmel\Coq2 (CG9613... gi\|220949886 - gi\|220949886\|gb\|ACL87486.1\| Coq2-PA [synthetic construct]	192.0	[0..3]	[269..78]
COQ2_DROPS - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=... gi\|125775189, gi... - gi\|54638587\|gb\|EAL27989.1\| GA21912 [Drosophila pseudoobscura pseudoobscura], gi\|125775189\|ref\|XP_001...	192.0	[0..3]	[269..84]
gi\|71005862, gi\|... - gi\|71005862\|ref\|XP_757597.1\| hypothetical protein UM01450.1 [Ustilago maydis 521], ref\|XP_399065.1\| ...	190.0	[0..2]	[239..632]
gi\|73956024 - gi\|73956024\|ref\|XP_546634.2\| PREDICTED: similar to heme A:farnesyltransferase [Canis familiaris]	188.0	[0..4]	[260..499]
COQ2_AEDAE - 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1	188.0	[0..4]	[269..118]
gi\|124506307, gi... - gi\|23613216\|ref\|NP_703538.1\| cytochrome c oxidase assembly protein (heme A: farnesyltransferase), pu...	188.0	[0..9]	[269..322]
gi\|114593901 - gi\|114593901\|ref\|XP_526592.2\| PREDICTED: para-hydroxybenzoate-polyprenyltransferase, mitochondrial i...	187.0	[0..2]	[269..121]
gi\|52138578, gi\|... - gi\|52138578\|ref\|NP_056512.3\| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Homo sapiens...	185.0	[0..2]	[269..121]

Back

Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRQDLVLFR PRLALLNGIA AVAGHALVPD AAHATLWVAL AGVAILAAGG SALNQVLERD  60
   61 LDRLMERTRQ RPLPRGDLSP AMATALGCAC IGTGLLVLAA GGPVPPLLGA VALAWYLAVY 120
  121 TPLKRRTSLA LAIGAVSGAL PPVIGWTLAG GAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [154-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDYRIILLAG IFFLWQVPHF WLFQRRHADD YRRAGIPLFT PGAGRLGPSF HVRLWLGALA  60
   61 ASVLLLPAFG LMAPRMAPWI AAVPLLLLPV CRPRSEATLF SCLNAFPPLM ALALLLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits