YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995330, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995330, gi|....

Description	E-value	Query Range	Subject Range
gi\|25006075, gi\|... - gi\|25057836\|ref\|NP_740068.1\| cytochrome c oxidase subunit III [Caranx melampygus], gi\|25006075\|dbj\|B...	243.0	[0..2]	[197..69]
gi\|25006061, gi\|... - gi\|25057822\|ref\|NP_740055.1\| cytochrome c oxidase subunit III [Carangoides armatus], gi\|25006061\|dbj...	242.0	[0..2]	[197..69]
gi\|38603501, gi\|... - gi\|58372104\|ref\|YP_194930.1\| cytochrome c oxidase subunit III [Trachurus trachurus], gi\|38603501\|dbj...	241.0	[0..2]	[197..69]
gi\|14588626, gi\|... - gi\|14602392\|ref\|NP_148770.1\| cytochrome c oxidase subunit III [Trachurus japonicus], gi\|14588640\|dbj...	241.0	[0..2]	[197..69]
gi\|16267261, gi\|... - gi\|16357353\|ref\|NP_443664.1\| cytochrome c oxidase subunit III [Mastacembelus favus], gi\|16267261\|dbj...	240.0	[0..2]	[197..69]
gi\|29501129\|dbj\|... - cytochrome c oxidase subunit III [Eigenmannia sp.], cytochrome oxidase subunit 3 [Eigenmannia sp.] gi\|29501129, gi\|... - gi\|29570648\|ref\|NP_818910.1\| cytochrome c oxidase subunit III [Eigenmannia sp. CBM-ZF-10620], gi\|295...	240.0	[0..2]	[197..69]
gi\|38707591, gi\|... - gi\|38707591\|ref\|NP_944730.1\| cytochrome c oxidase subunit III [Pontoporia blainvillei], gi\|38602550\|...	239.0	[0..2]	[197..69]
gi\|15987265, gi\|... - gi\|15987265\|ref\|NP_387478.1\|COX3_15795 cytochrome c oxidase subunit III [Neoceratodus forsteri], gi\|...	238.0	[0..2]	[197..69]
gi\|16026859, gi\|... - gi\|16117431\|ref\|NP_395446.1\| cytochrome c oxidase subunit III [Chimaera monstrosa], gi\|16026859\|emb\|...	238.0	[0..2]	[197..69]
gi\|32402532, gi\|... - gi\|32402532\|ref\|NP_861482.1\| cytochrome c oxidase subunit III [Procavia capensis], gi\|32187987\|dbj\|B...	237.0	[0..2]	[197..69]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHATHRDYA GAKLGMWLFL FTEMLLFGGL FILYAVYLHR YPAEFAAAGH RLDLVLGTAN  60
   61 TVILLTSSLL AALAVTAVQR DEGRVAFRAL GGTILCAGLF LGIKYAEWSA KISHGIYPGS 120
  121 PDLAAGPPGE SVFFGLYYLT TGLHGLHVLI GGVLLTVVAR RVKGGRVHAG DYIWLENGAL 180
  181 YWHLVDLVWI FIFPLYYLML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1v54C
Description:	Bovine heart cytochrome c oxidase at the fully oxidized state
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.45526102652778	bayes_pls_golite062009
oxidoreductase activity	0.81543220214293	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.22569417277227	bayes_pls_golite062009
transporter activity	0.00518368867817998	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: