YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982089, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982089, gi|....

Description	E-value	Query Range	Subject Range
gi\|148263312, gi... - gi\|88937813\|ref\|ZP_01143354.1\| nitroreductase family protein [Geobacter uraniumreducens Rf4], gi\|889...	191.0	[0..1]	[188..1]
gi\|78224031, gi\|... - gi\|78224031\|ref\|YP_385778.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195286\|gb\|ABB330...	190.0	[0..1]	[188..1]
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	178.0	[0..1]	[186..1]
gi\|110600504, gi... - gi\|222054060\|ref\|YP_002536422.1\| nitroreductase [Geobacter sp. FRC-32], gi\|221563349\|gb\|ACM19321.1\| ...	178.0	[0..1]	[187..1]
gi\|219993268, gi... - gi\|89210024\|ref\|ZP_01188417.1\| Nitroreductase [Halothermothrix orenii H 168], gi\|89160364\|gb\|EAR8001...	162.0	[0..1]	[188..1]
gi\|114845237, gi... - gi\|167039852\|ref\|YP_001662837.1\| nitroreductase [Thermoanaerobacter sp. X514], gi\|166854092\|gb\|ABY92... gi\|242232222, gi... - gi\|242256267\|ref\|ZP_04801161.1\| nitroreductase [Thermoanaerobacter sp. X513], gi\|242232222\|gb\|EES345...	161.0	[0..1]	[186..1]
gi\|89893168, gi\|... - gi\|89893168\|ref\|YP_516655.1\| hypothetical protein DSY0422 [Desulfitobacterium hafniense Y51], gi\|893... gi\|219536700, gi... - gi\|68206813\|ref\|ZP_00558993.1\| Nitroreductase [Desulfitobacterium hafniense DCB-2], gi\|68169336\|gb\|E...	161.0	[0..1]	[188..1]
gi\|241885212, gi... - gi\|241902497\|ref\|ZP_04787231.1\| nitroreductase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|... gi\|76588082, gi\|... - gi\|76796578\|ref\|ZP_00778937.1\| Nitroreductase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765880...	160.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLEAIRTR RSVRAFSDRP VEPEKLQMVL EAARQAPSWA NMQCSRFVVV QDAEVKAKIS  60
   61 ELSFVEAFFA PLGYRTNPAQ KALAEAPVVI VACGVPGESG DLRGQQYYMT DVGIATENLM 120
  121 LAAHAVGLGS VFVGVFGEEQ LGDLLDIPPE IRIVGLFPLG YPREETQAKS GPARKPLDEI 180
  181 VFQGKWKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	0.43028339671415	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: