YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982072, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982072, gi|....

Description	E-value	Query Range	Subject Range
gi\|48846824, gi\|... - gi\|78222058\|ref\|YP_383805.1\| ferredoxin:(2Fe-2S)-binding protein [Geobacter metallireducens GS-15], ...	183.0	[0..1]	[154..1]
gi\|62484833 - gi\|62484833\|emb\|CAI78850.1\| 4-hydroxybenzoyl-CoA reductase alpha/gamma subunit (hcrC/hcrA) [uncultur...	178.0	[0..3]	[156..6]
gi\|48862172, gi\|... - gi\|90022496\|ref\|YP_528323.1\| putative oxidoreductase [Saccharophagus degradans 2-40], gi\|89952096\|gb...	177.0	[0..1]	[150..1]
gi\|83954425, gi\|... - gi\|83954425\|ref\|ZP_00963145.1\| Membrane-bound aldehyde dehydrogenase, small subunit [Sulfitobacter s...	173.0	[0..1]	[151..1]
gi\|83846301, gi\|... - gi\|83943293\|ref\|ZP_00955753.1\| Membrane-bound aldehyde dehydrogenase, small subunit [Sulfitobacter s...	173.0	[0..1]	[151..1]
gi\|109701107, gi... - gi\|76793907\|ref\|ZP_00776387.1\| Ferredoxin:(2Fe-2S)-binding [Pseudoalteromonas atlantica T6c], gi\|765...	173.0	[0..1]	[151..1]
gi\|106771004, gi... - gi\|106890163\|ref\|ZP_01357359.1\| Ferredoxin:(2Fe-2S)-binding [Roseiflexus sp. RS-1], gi\|106771004\|gb\|...	172.0	[0..2]	[151..4]
gi\|94499129, gi\|... - gi\|94499129\|ref\|ZP_01305667.1\| probable oxidoreductase [Oceanobacter sp. RED65], gi\|94428761\|gb\|EAT1...	172.0	[0..1]	[154..1]
gi\|167644022, gi... - gi\|167644022\|ref\|YP_001681685.1\| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Caulo...	170.0	[0..3]	[146..4]
gi\|116123321, gi... - gi\|118789655\|ref\|XP_317568.3\| AGAP007918-PA [Anopheles gambiae str. PEST], gi\|116123321\|gb\|EAA12866....	169.0	[0..2]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVFLVNGKE QRVDVSPDTP LLWVLRDKLG LTGTKYGCGE GLCGACTVHI DGRPERSCIT  60
   61 PVGDVQGKKV VTIEGIPENH PVKKSWLAQD VSQCGYCQPG QIMSAVALLA SKPSPTDADI 120
  121 DSAMSGNLCR CGTYGRIRRA IHAAGGRRAR KGGSRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1ffuA
Description:	Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain; Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	1.8452767229444	bayes_pls_golite062009
oxidoreductase activity	1.29798120961328	bayes_pls_golite062009
catalytic activity	0.475559813757564	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: