YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39982052, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39982052, gi|....

Description	E-value	Query Range	Subject Range
gi\|71740491, gi\|... - gi\|71839105\|ref\|ZP_00678859.1\| NADPH-dependent FMN reductase [Pelobacter propionicus DSM 2379], gi\|7...	180.0	[0..1]	[211..1]
gi\|25329242 - pir\|\|A97328 multimeric flavodoxin WrbA family protein [imported] - Clostridium acetobutylicum gi\|15026577, gi\|... - gi\|15896723\|ref\|NP_350072.1\| multimeric flavodoxin WrbA family protein [Clostridium acetobutylicum A...	178.0	[0..1]	[211..1]
gi\|78042813, gi\|... - gi\|78042813\|ref\|YP_360548.1\| FMN reductase, NADPH-dependent [Carboxydothermus hydrogenoformans Z-290...	177.0	[0..1]	[211..1]
gi\|82747766, gi\|... - gi\|82747766\|ref\|ZP_00910259.1\| multimeric flavodoxin WrbA family protein [Clostridium beijerincki NC...	176.0	[0..1]	[211..1]
gi\|34483258 - gi\|34483258\|emb\|CAE10256.1\| MULTIMERIC FLAVODOXIN WRBA FAMILY PROTEIN [Wolinella succinogenes] gi\|34557541 - gi\|34557541\|ref\|NP_907356.1\| multimeric flavodoxin WrbA family protein [Wolinella succinogenes DSM 1...	175.0	[0..1]	[211..1]
gi\|146297399, gi... - gi\|82499433\|ref\|ZP_00884878.1\| NADPH-dependent FMN reductase domain protein [Caldicellulosiruptor sa...	172.0	[0..1]	[211..1]
gi\|77544791, gi\|... - gi\|77918708\|ref\|YP_356523.1\| putative NADPH-dependent FMN reductase [Pelobacter carbinolicus DSM 238...	172.0	[0..1]	[204..1]
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	166.0	[0..1]	[191..1]

Back

Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVVAFNGSP KADGNTWHAL KMVTAELESE GIETEIVHVG NKVVRGCIAC GQCAKNKNER  60
   61 CVLPGDEVNE WIQKMKQADG IIISSPVYYS AIAGTMKSFL DRAFYVTGVN DGMLRHKVGA 120
  121 SVVAVRRSGG IPTFNQLNNF LTYAEMLVPT SNYWNVIHGR APGEATQDEE GVQIMRVLGK 180
  181 NMAWLLKLVE HGKGAVTPPE RETKTYMSFI R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1qr2A
Description:	Quinone reductase type 2 (menadione reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.275631658558537	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: