YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPA_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPA_GEOSL.

Description	E-value	Query Range	Subject Range
DAPA_GEOMG - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / ...	377.0	[0..1]	[290..1]
DAPA_GEOUR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter uraniireducens (strain Rf4) GN=dapA PE=3 SV=1	377.0	[0..1]	[290..1]
DAPA_GEODF - 4-hydroxy-tetrahydrodipicolinate synthase OS=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-...	370.0	[0..1]	[290..1]
gi\|91202476 - gi\|91202476\|emb\|CAJ72115.1\| strongly similar to dihydropicolinate synthase (DHDPS) [Candidatus Kuene...	369.0	[0..1]	[290..1]
gi\|241906440, gi... - gi\|241906440\|ref\|ZP_04791022.1\| dihydrodipicolinate synthase [Desulfovibrio vulgaris RCH1], gi\|24188... DAPA_DESVV - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=... DAPA_DESVH - 4-hydroxy-tetrahydrodipicolinate synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 295...	368.0	[0..2]	[290..3]
DAPA_AQUAE - Dihydrodipicolinate synthase OS=Aquifex aeolicus GN=dapA PE=1 SV=1 DAPA_AQUAE - 4-hydroxy-tetrahydrodipicolinate synthase OS=Aquifex aeolicus (strain VF5) GN=dapA PE=1 SV=1	367.0	[0..1]	[289..1]
gi\|71739774, gi\|... - gi\|71839778\|ref\|ZP_00679520.1\| Dihydrodipicolinate synthase subfamily [Pelobacter propionicus DSM 23...	367.0	[0..1]	[290..10]
DAPA_BARBK - 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN...	366.0	[0..1]	[290..1]
DAPA_METJA - Dihydrodipicolinate synthase OS=Methanocaldococcus jannaschii GN=dapA PE=1 SV=1 DAPA_METJA - 4-hydroxy-tetrahydrodipicolinate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM ...	365.0	[0..1]	[290..1]
DAPA_CAUCR - Dihydrodipicolinate synthase OS=Caulobacter crescentus GN=dapA PE=3 SV=1 DAPA_CAUCR - 4-hydroxy-tetrahydrodipicolinate synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=da...	362.0	[0..2]	[289..6]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKGSIVAIV TPFTNGAVDQ EKLRELVEFQ ITNGTDAIVP CGTTGESSTL DYDEHMDVVK  60
   61 IVIEQVNKRV PVIAGTGSNS TAEAIELSRK AKEAGADGVL LVTPYYNKPT QEGLVRHYTA 120
  121 IADAVAIPQI LYNVPGRTGV NMLPETVARL APHKNIVAIK EATGSLQQAS EILALCGDQI 180
  181 DVLSGDDFIT FPMMACGAKG VISVLANIMP KAVADLTDAF FAGDLETARR LHLNTLKISN 240
  241 AMFIESNPIP VKTALGLMGK CSDEVRLPLC PMSEGNKAKL TAIMKEYQLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2ehhA
Description:	No description for 2ehhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits