YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39981979, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39981979, gi|....

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	254.0	[0..1]	[255..1]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	247.0	[0..1]	[255..1]
gi\|51858156, gi\|... - gi\|51894467\|ref\|YP_077158.1\| ParA family ATPase [Symbiobacterium thermophilum IAM 14863], gi\|5185815...	246.0	[0..1]	[256..1]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	246.0	[0..1]	[255..1]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	243.0	[0..1]	[252..1]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	243.0	[0..1]	[255..1]
gi\|254479401, gi... - gi\|254479401\|ref\|ZP_05092734.1\| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carb... gi\|20517799, gi\|... - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong... gi\|20809120 - gi\|20809120\|ref\|NP_624291.1\| ATPase involved in chromosome partitioning [Thermoanaerobacter tengcong...	243.0	[0..1]	[252..1]
gi\|77684192, gi\|... - gi\|77684192\|ref\|ZP_00799628.1\| Cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigenes QY...	243.0	[0..1]	[255..1]
gi\|49235569, gi\|... - gi\|83591332\|ref\|YP_431341.1\| chromosome segregation ATPase [Moorella thermoacetica ATCC 39073], gi\|8...	241.0	[0..1]	[252..1]
gi\|56422025, gi\|... - gi\|56422025\|ref\|YP_149343.1\| sporulation initiation inhibitor protein [Geobacillus kaustophilus HTA4... gi\|229497925, gi... - gi\|229497925\|ref\|ZP_04391624.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC52], gi\|22... gi\|221086934, gi... - gi\|221086934\|ref\|ZP_03556474.1\| Cobyrinic acid ac-diamide synthase [Geobacillus sp. Y412MC61], gi\|22...	241.0	[0..1]	[252..1]

Back

Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIICIANQ KGGVGKTTTA VNLAASLAAA EKQTLLVDMD PQGNAGSGVG VDKAGLEESV  60
   61 YDAIINDVDP SGLIVGTDLA HLDLLPSTTD LAGAELELVS MPERERRLKA ALARLSQRYD 120
  121 YIIIDCPPSL GLLTVNAMTA ADSVLIPLQC EYYAMEGLSQ IIKTIKLVQK GLNPGLAIEG 180
  181 IVLTMYDGRN NLSRQVSEEI RGHFADIAFQ TVIPRNVRLS EAPSHGRPVI LYDITSRGAV 240
  241 SYMELARELM TREVRRG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits