YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995202, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995202, gi|....

Description	E-value	Query Range	Subject Range
HDB2_METJA, HDRB... - CoB--CoM heterodisulfide reductase subunit B 2 OS=Methanocaldococcus jannaschii GN=hdrB2 PE=3 SV=1, ... HDRB2_METJA - CoB--CoM heterodisulfide reductase subunit B 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 /...	261.0	[0..8]	[295..1]
gi\|45047584, gi\|... - gi\|45358718\|ref\|NP_988275.1\| heterosulfide reductase, subunit B1 [Methanococcus maripaludis S2], gi\|...	260.0	[0..5]	[295..3]
gi\|45510798, gi\|... - gi\|75909853\|ref\|YP_324149.1\| succinate dehydrogenase subunit C [Anabaena variabilis ATCC 29413], gi\|...	251.0	[0..9]	[295..7]
gi\|17230833, gi\|... - gi\|17230833\|ref\|NP_487381.1\| heterodisulfide reductase, subunit B [Nostoc sp. PCC 7120], gi\|17132436... gi\|25332391 - pir\|\|AF2223 heterodisulfide reductase, chain B [imported] - Nostoc sp. (strain PCC 7120)	250.0	[0..9]	[294..7]
HDRB_METTM - CoB--CoM heterodisulfide reductase subunit B OS=Methanothermobacter marburgensis (strain DSM 2133 / ... gi\|7451871, gi\|7... - pir\|\|S78509 heterodisulfide reductase (EC 1.97.1.-) chain B - Methanobacterium thermoautotrophicum (...	247.0	[0..8]	[293..1]
gi\|84489812, gi\|... - gi\|84489812\|ref\|YP_448044.1\| HdrB1 [Methanosphaera stadtmanae DSM 3091], gi\|84373131\|gb\|ABC57401.1\| ...	247.0	[0..8]	[293..1]
gi\|48841083, gi\|... - gi\|73668183\|ref\|YP_304198.1\| CoB--CoM heterodisulfide reductase subunit B [Methanosarcina barkeri st...	246.0	[0..7]	[292..1]
HDRB_METAC - CoB--CoM heterodisulfide reductase 1 subunit B OS=Methanosarcina acetivorans (strain ATCC 35395 / DS... HDRB_METAC - CoB--CoM heterodisulfide reductase 1 subunit B OS=Methanosarcina acetivorans GN=hdrB PE=3 SV=1	245.0	[0..7]	[292..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAKNLLNY SYYPGCSLHA SAKEYDESTR GLFRALKIGL HEVPDWLCCG ATPAHNVDEL  60
   61 LSLSLCAKNL SLAEEVGGDL AVACAACF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.638272
Match:	PF02754.7
Description:	No description for PF02754.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.728	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.701	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.633	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.568	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.549	N/A	N/A	c.78.2	Aspartate/glutamate racemase

Predicted Domain #2

Region A:
Residues: [89-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRLKVTQHRL ADNEEKRRQV EYAIDGKVSF DNKVKHLLEI LAKDFGLDRL TAAVRKPLEG  60
   61 LKVACYYGCL LTRPPEVPEL DDCEAPTIME RVIGAAGAET VTWS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [193-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HRMECCGANF TLSRPGVVLK LSGDILASAK AAGANCILVA CPLCHGNLDI RQKEIEEASG  60
   61 QWFGMPVFYM TQLLALAVGV APAKLGFDSM IVNPLPLLKE KGLV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	7.823909
Match:	PF02754.7
Description:	No description for PF02754.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.582	N/A	N/A	c.78.2	Aspartate/glutamate racemase
View	Download	0.485	N/A	N/A	d.58.34	Formiminotransferase domain of formiminotransferase-cyclodeaminase.
View	Download	0.463	N/A	N/A	c.18.1	DNA glycosylase
View	Download	0.392	N/A	N/A	c.23.1	CheY-like
View	Download	0.353	N/A	N/A	c.30.1	PreATP-grasp domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits