YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995200, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995200, gi|....

Description	E-value	Query Range	Subject Range
gi\|221566088, gi... - gi\|222056799\|ref\|YP_002539161.1\| methyl-viologen-reducing hydrogenase delta subunit [Geobacter sp. F...	267.0	[0..1]	[166..1]
gi\|148265605, gi... - gi\|88934373\|ref\|ZP_01140016.1\| heterodisulfide reductase subunit [Geobacter uraniumreducens Rf4], gi...	263.0	[0..7]	[166..29]
gi\|48847468, gi\|... - gi\|78224617\|ref\|YP_386364.1\| methyl-viologen-reducing hydrogenase, delta subunit [Geobacter metallir...	259.0	[0..1]	[166..1]
gi\|726080 - gi\|726080\|gb\|AAA87440.1\| unknown [Methanothermobacter thermautotrophicus]	235.0	[0..9]	[146..2]
gi\|726066, gi\|74... - pir\|\|E69018 methyl viologen-reducing hydrogenase, delta subunit homolog FlpD - Methanobacterium ther... gi\|2622243, gi\|1... - gi\|2622243\|gb\|AAB85627.1\| methyl viologen-reducing hydrogenase, delta subunit homolog FlpD [Methanot...	230.0	[0..9]	[140..2]
gi\|19886596, gi\|... - gi\|20093708\|ref\|NP_613555.1\| coenzyme F420-reducing hydrogenase, delta subunit [Methanopyrus kandler...	229.0	[0..7]	[144..1]
gi\|44921142, gi\|... - gi\|45358384\|ref\|NP_987941.1\| coenzyme F420-non-reducing hydrogenase subunit delta [Methanococcus mar...	229.0	[0..9]	[144..4]
gi\|809733\|emb\|CA... - vhcD [Methanococcus voltae] VHCD_METVO - F420-non-reducing hydrogenase vhc iron-sulfur subunit D OS=Methanococcus voltae GN=vhcD PE=2 SV=1	229.0	[0..10]	[142..5]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIHKEKHAF EPKIVAFVCT WCTYAGADLA GTSRMHYPAN VRVVKFPCTG RIDPVFILRA  60
   61 FQKGADGILV SGCHPGDCHY MAGNFHARRR FAVFRQLLDF IGVDLQRLQF SWVSAAEGGK 120
  121 WVEVVTELTE RVRAQGPMPE FKELEAEEHW SGAIDTPELN AAYNDI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.552842
Match:	PF02662.7
Description:	No description for PF02662.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits