YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995173, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995173, gi|....

Description	E-value	Query Range	Subject Range
gi\|54292937, gi\|... - gi\|54292937\|ref\|YP_122324.1\| hypothetical protein plpl0031 [Legionella pneumophila str. Lens], gi\|53...	135.0	[0..3]	[109..230]
gi\|50882671 - gi\|50882671\|gb\|AAT85682.1\| TraD [Escherichia coli]	133.0	[0..5]	[109..235]
gi\|52538087, gi\|... - gi\|52788158\|ref\|YP_093986.1\| conjugal transfer protein TraD [Yersinia pestis], gi\|52538087\|emb\|CAG27...	132.0	[0..4]	[109..244]
gi\|75510815 - gi\|75510815\|ref\|ZP_00733630.1\| COG3505: Type IV secretory pathway, VirD4 components [Escherichia col...	131.0	[0..5]	[109..228]
gi\|94498146, gi\|... - gi\|94498146\|ref\|ZP_01304708.1\| Type IV secretory pathway VirD4 components-like protein [Sphingomonas...	131.0	[0..4]	[109..287]
gi\|75238436 - gi\|75238436\|ref\|ZP_00722433.1\| COG3505: Type IV secretory pathway, VirD4 components [Escherichia col...	131.0	[0..5]	[109..228]
gi\|75235034 - gi\|75235034\|ref\|ZP_00719299.1\| COG3505: Type IV secretory pathway, VirD4 components [Escherichia col...	131.0	[0..5]	[109..228]
gi\|83586598 - gi\|83586598\|ref\|ZP_00925231.1\| COG3505: Type IV secretory pathway, VirD4 components [Escherichia col...	131.0	[0..5]	[109..228]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNTPFVRQP LDKRCVGWTI FNDLETTIDI QALAASLIPA AAGNTDPFWN GAARDVFTGI  60
   61 LSSLWRDNYR SNRGIWNSLT APIEEIAEMI HGVAGGEATV TTAGTRMVSW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1gl6A
Description:	Bacterial conjugative coupling protein TrwB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits