YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995146, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995146, gi|....

Description	E-value	Query Range	Subject Range
gi\|48845785, gi\|... - gi\|78224713\|ref\|YP_386460.1\| 2',5' RNA ligase [Geobacter metallireducens GS-15], gi\|78195968\|gb\|ABB3...	197.0	[0..2]	[179..1]
Y099_PYRHO - UPF0097 protein PH0099 OS=Pyrococcus horikoshii GN=PH0099 PE=1 SV=1 THPR_PYRHO - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	193.0	[0..2]	[178..1]
gi\|7446640, gi\|5... - pir\|\|C75197 conserved hypothetical protein PAB0062 - Pyrococcus abyssi (strain Orsay), gi\|5457535\|e... gi\|14520320, gi\|... - gi\|5457535\|emb\|CAB49026.1\| 2'-5' RNA ligase [Pyrococcus abyssi GE5], gi\|14520320\|ref\|NP_125795.1\| hy...	192.0	[0..2]	[178..1]
THPR_PYRFU - RNA 2',3'-cyclic phosphodiesterase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 /...	192.0	[0..2]	[178..1]
gi\|25520739 - pir\|\|F97680 hypothetical 35.7K protein in mala 3'region (orf3) [imported] - Agrobacterium tumefacien... gi\|15889933, gi\|... - gi\|15889933\|ref\|NP_355614.1\| hypothetical protein AGR_C_4856 [Agrobacterium tumefaciens str. C58], g...	190.0	[0..1]	[177..16]
gi\|24212809, gi\|... - gi\|24212809\|ref\|NP_710290.1\| 2'-5' RNA ligase [Leptospira interrogans serovar Lai str. 56601], gi\|24... gi\|45656008, gi\|... - gi\|45656008\|ref\|YP_000094.1\| 2'-5' RNA ligase [Leptospira interrogans serovar Copenhageni str. Fiocr...	189.0	[0..2]	[177..1]
gi\|13473672, gi\|... - gi\|14024422\|dbj\|BAB51026.1\| ABC transporter (permease) [Mesorhizobium loti MAFF303099], gi\|13473672\|...	189.0	[0..1]	[179..1]
gi\|71041774 - gi\|71041774\|pdb\|1VGJ\|A Chain A, Crystal Structure Of 2'-5' Rna Ligase From Pyrococcus Horikoshii	187.0	[0..3]	[178..2]
gi\|110635677, gi... - gi\|69276027\|ref\|ZP_00611775.1\| 2'_5' RNA ligase [Mesorhizobium sp. BNC1], gi\|68193073\|gb\|EAN07726.1\|...	187.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRLFVAIDL PGSVRAQLAD LGRELDGVRL VPPDQLHLTL RFIGNADDEC FQRIKDSLAT  60
   61 VTSPPFTLAL AGVGCFPSPR RPRVIWAGIT PNERLTLLQR AVEKAVAAAG IPPEERPFCP 120
  121 HITLARLKEA IPEGFPAFQS RHGGLSAEPF TVEEFLLYSS TLTAGSALHR REASYRLTG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	1vdxA
Description:	Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits