YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_GEOSL
Organism:	Geobacter sulfurreducens PCA
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_GEOSL.

Description	E-value	Query Range	Subject Range
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	186.0	[0..35]	[197..44]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	179.0	[0..2]	[200..4]
RPA0331 - RPA0331 possible heat shock protein (HSP-70 COFACTOR), grpE 358745:359371 forward MW:22207	178.0	[0..14]	[200..4]
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2	177.0	[0..14]	[200..3]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	176.0	[0..1]	[195..93]
gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA... gi\|90420648, gi\|... - gi\|90420648\|ref\|ZP_01228554.1\| grpE chaperone protein [Aurantimonas sp. SI85-9A1], gi\|90334939\|gb\|EA...	176.0	[0..47]	[198..66]
GRPE_CHESB - Protein GrpE OS=Chelativorans sp. (strain BNC1) GN=grpE PE=3 SV=1	175.0	[0..8]	[199..8]
gi\|87283787, gi\|... - gi\|87301570\|ref\|ZP_01084410.1\| Heat shock protein GrpE [Synechococcus sp. WH 5701], gi\|87283787\|gb\|E...	175.0	[0..10]	[200..28]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	175.0	[0..2]	[200..4]
GRPE_PELPD - Protein GrpE OS=Pelobacter propionicus (strain DSM 2379) GN=grpE PE=3 SV=1	174.0	[0..8]	[197..2]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKKHGTVQ SADETIAAAG FAGEAAQGKG EDVQSVAAEE RIRQLETELA AKEAEAAANW  60
   61 DKFVRERADL ENYRRRTQKE KEELLKYGNE SLLQDILPVV DSMERALGHA DSESLSAVIE 120
  121 GIRMTHGMLL GTLKKFGVVA VEAERGTVFD PAYHQAMCQV EVSELPPNTV VEVFQRGYLL 180
  181 NERLLRPAMV SVATVPKDAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits