YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39995133, gi\|...
Organism:	Geobacter sulfurreducens PCA
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39995133, gi|....

Description	E-value	Query Range	Subject Range
gi\|67533054, gi\|... - gi\|67545725\|ref\|ZP_00423645.1\| Twin-arginine translocation protein TatB [Burkholderia vietnamiensis ...	104.0	[0..1]	[111..1]
gi\|170135587, gi... - gi\|170699500\|ref\|ZP_02890542.1\| twin-arginine translocation protein, TatB subunit [Burkholderia ambi... TATB_BURCM - Sec-independent protein translocase protein TatB OS=Burkholderia ambifaria (strain ATCC BAA-244 / AM...	104.0	[0..1]	[111..1]
gi\|192958595, gi... - gi\|75238287\|ref\|ZP_00722286.1\| COG1826: Sec-independent protein secretion pathway components [Escher...	103.0	[0..1]	[111..1]
TATB_ECOL5 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) ... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6 GN=tatB PE=3 SV=1 TATB_ECOUT - Sec-independent protein translocase protein TatB OS=Escherichia coli (strain UTI89 / UPEC) GN=tatB P... gi\|75237628, gi\|... - gi\|75237628\|ref\|ZP_00721648.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|218367689, gi... - gi\|218560920\|ref\|YP_002393833.1\| sec-independent translocase [Escherichia coli S88], gi\|218367689\|em... gi\|215267250, gi... - gi\|215489178\|ref\|YP_002331609.1\| sec-independent translocase [Escherichia coli O127:H6 str. E2348/69... gi\|218692131, gi... - gi\|218692131\|ref\|YP_002400343.1\| sec-independent translocase [Escherichia coli ED1a], gi\|218429695\|e... gi\|227888549, gi... - gi\|227888549\|ref\|ZP_04006354.1\| sec-independent translocase [Escherichia coli 83972], gi\|227834388\|g... gi\|237702872, gi... - gi\|237702872\|ref\|ZP_04533353.1\| sec-independent translocase [Escherichia sp. 3_2_53FAA], gi\|22690304... TATB_ECOL6 - Sec-independent protein translocase protein TatB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700...	103.0	[0..1]	[111..1]
TATB_BURXL - Sec-independent protein translocase protein TatB OS=Burkholderia xenovorans (strain LB400) GN=tatB P...	103.0	[0..1]	[101..1]
TATB_ECOK1 - Sec-independent protein translocase protein TatB OS=Escherichia coli O1:K1 / APEC GN=tatB PE=3 SV=1	103.0	[0..1]	[111..1]
gi\|253975697, gi... - gi\|254163796\|ref\|YP_003046904.1\| sec-independent translocase [Escherichia coli B str. REL606], gi\|25... gi\|254595235, gi... - gi\|254795835\|ref\|YP_003080672.1\| component of Sec-independent translocase [Escherichia coli O157:H7 ... gi\|24054405, gi\|... - gi\|24115133\|ref\|NP_709643.1\| sec-independent translocase [Shigella flexneri 2a str. 301], gi\|2405440... gi\|30043126, gi\|... - gi\|30064866\|ref\|NP_839037.1\| sec-independent translocase [Shigella flexneri 2a str. 2457T], gi\|30043... TATB_SHIFL - Sec-independent protein translocase protein TatB OS=Shigella flexneri GN=tatB PE=3 SV=1 TATB_ECO57 - Sec-independent protein translocase protein TatB OS=Escherichia coli O157:H7 GN=tatB PE=3 SV=1 EG14322 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... TATB_ECOLI - Sec-independent protein translocase protein tatB - Escherichia coli gi\|124499192, gi... - gi\|124530426\|ref\|ZP_01701084.1\| twin-arginine translocation protein, TatB subunit [Escherichia coli ... gi\|161367481 - gi\|161367481\|ref\|NP_290469.2\| sec-independent translocase [Escherichia coli O157:H7 EDL933] gi\|168750345, gi... - gi\|188015448\|gb\|EDU53570.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|161986409 - gi\|161986409\|ref\|YP_312769.2\| sec-independent translocase [Shigella sonnei Ss046] gi\|187768881, gi... - gi\|187768881\|gb\|EDU32725.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|189365992, gi... - gi\|189365992\|gb\|EDU84408.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|189373209, gi... - gi\|189373209\|gb\|EDU91625.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|168780742, gi... - gi\|189001590\|gb\|EDU70576.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|75209536, gi\|... - gi\|75209536\|ref\|ZP_00709757.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|209914575, gi... - gi\|209921316\|ref\|YP_002295400.1\| sec-independent translocase [Escherichia coli SE11], gi\|209914575\|d... gi\|190903906, gi... - gi\|75230798\|ref\|ZP_00717261.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|209400771, gi... - gi\|209400771\|ref\|YP_002273356.1\| twin arginine-targeting protein translocase TatB [Escherichia coli ... EG14322 - TatABCE protein translocation system subunit / Protein translocase, Sec-independent; mediates export... gi\|193065714, gi... - gi\|75256239\|ref\|ZP_00727917.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|218556403, gi... - gi\|218556403\|ref\|YP_002389317.1\| sec-independent translocase [Escherichia coli IAI1], gi\|218363172\|e... gi\|188487895, gi... - gi\|75512608\|ref\|ZP_00735120.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|217321900, gi... - gi\|217325679\|ref\|ZP_03441763.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|89110183, gi\|... - gi\|89110183\|ref\|AP_003963.1\| TatABCE protein translocation system subunit [Escherichia coli str. K-1... gi\|218371444, gi... - gi\|218701458\|ref\|YP_002409087.1\| sec-independent translocase [Escherichia coli IAI39], gi\|218371444\|... gi\|218697558, gi... - gi\|218697558\|ref\|YP_002405225.1\| sec-independent translocase [Escherichia coli 55989], gi\|218354290\|... gi\|218434567, gi... - gi\|218707470\|ref\|YP_002414989.1\| sec-independent translocase [Escherichia coli UMN026], gi\|218434567... gi\|13364243, gi\|... - gi\|15834021\|ref\|NP_312794.1\| sec-independent translocase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|169757069, gi... - gi\|170022141\|ref\|YP_001727095.1\| sec-independent translocase [Escherichia coli ATCC 8739], gi\|169757... TATB_SHIF8 - Sec-independent protein translocase protein TatB OS=Shigella flexneri serotype 5b (strain 8401) GN=t... gi\|168801093, gi... - gi\|189376695\|gb\|EDU95111.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O157:... gi\|170518329, gi... - gi\|170680611\|ref\|YP_001746171.1\| twin arginine-targeting protein translocase TatB [Escherichia coli ... gi\|169891152, gi... - gi\|170083317\|ref\|YP_001732637.1\| TatABCE protein translocation system subunit [Escherichia coli str.... gi\|194434077, gi... - gi\|83569327\|ref\|ZP_00920782.1\| COG1826: Sec-independent protein secretion pathway components [Shigel... gi\|208727891, gi... - gi\|208808090\|ref\|ZP_03250427.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|238902912, gi... - gi\|238902912\|ref\|YP_002928708.1\| TatABCE protein translocation system subunit [Escherichia coli BW29... gi\|194438583, gi... - gi\|83585902\|ref\|ZP_00924541.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|195938129 - gi\|195938129\|ref\|ZP_03083511.1\| sec-independent translocase [Escherichia coli O157:H7 str. EC4024] gi\|251787109, gi... - gi\|251787109\|ref\|YP_003001413.1\| hypothetical protein B21_03679 [Escherichia coli BL21], gi\|24237938... gi\|157159437, gi... - gi\|75188579\|ref\|ZP_00701846.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|208741819, gi... - gi\|208821696\|ref\|ZP_03262016.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|254290546, gi... - gi\|254290546\|ref\|YP_003056294.1\| sec-independent translocase [Escherichia coli BL21(DE3)], gi\|253979... gi\|75197720, gi\|... - gi\|75197720\|ref\|ZP_00707790.1\| COG1826: Sec-independent protein secretion pathway components [Escher... gi\|208734088, gi... - gi\|208812811\|ref\|ZP_03254140.1\| twin arginine-targeting protein translocase TatB [Escherichia coli O... gi\|254039050, gi... - gi\|254039050\|ref\|ZP_04873101.1\| twin arginine-targeting protein translocase TatB [Escherichia sp. 1_...	102.0	[0..1]	[111..1]
gi\|161984818 - gi\|161984818\|ref\|YP_410137.2\| sec-independent translocase [Shigella boydii Sb227] gi\|75177803, gi\|... - gi\|75177803\|ref\|ZP_00697868.1\| COG1826: Sec-independent protein secretion pathway components [Shigel...	101.0	[0..1]	[111..1]
TATB_BURL3 - Sec-independent protein translocase protein TatB OS=Burkholderia lata (strain ATCC 17760 / LMG 22485... TATB_BURS3 - Sec-independent protein translocase protein TatB OS=Burkholderia sp. (strain 383) GN=tatB PE=3 SV=1	101.0	[0..1]	[110..1]
TATB_BURCH - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain HI2424) GN=tatB... TATB_BURCA - Sec-independent protein translocase protein TatB OS=Burkholderia cenocepacia (strain AU 1054) GN=tat... gi\|124871292, gi... - gi\|254246516\|ref\|ZP_04939837.1\| Twin-arginine translocation protein TatB [Burkholderia cenocepacia P... gi\|169815013, gi... - gi\|170731771\|ref\|YP_001763718.1\| sec-independent translocase [Burkholderia cenocepacia MC0-3], gi\|16...	100.0	[0..1]	[111..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIGMPELI VILVIALIVI GPQKLPDIAR SLGKGLAEFK RASDDFQRNL AEEVRTLDEK  60
   61 EKAEKGEAAA EPVKRDLAAE VKAYEDQAAS GVHQGEPAPV AGSPESEKKS A

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1f6gA
Description:	Potassium channel protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transporter activity	1.2272927234572	bayes_pls_golite062009
transmembrane transporter activity	1.08210454998006	bayes_pls_golite062009
substrate-specific transporter activity	0.778889998230651	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.63634625216315	bayes_pls_golite062009
ion transmembrane transporter activity	0.401492076359672	bayes_pls_golite062009
cation transmembrane transporter activity	0.291785573433698	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.253003747877298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: