YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: THYX_WOLSU
Organism: Wolinella succinogenes
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THYX_WOLSU.

Description E-value Query
Range
Subject
Range
gi|168214714, gi... - gi|170713810|gb|EDT25992.1| thymidylate synthase, flavin-dependent [Clostridium perfringens CPE str....
gi|182380042, gi... - gi|182380042|gb|EDT77521.1| thymidylate synthase, flavin-dependent [Clostridium perfringens NCTC 823...
gi|169297747, gi... - gi|169344136|ref|ZP_02865119.1| thymidylate synthase, flavin-dependent [Clostridium perfringens C st...
gi|182626994, gi... - gi|182626994|ref|ZP_02954724.1| thymidylate synthase, flavin-dependent [Clostridium perfringens D st...
THYX_CLOPE - Thymidylate synthase ThyX OS=Clostridium perfringens (strain 13 / Type A) GN=thyX PE=3 SV=1
gi|170661745, gi... - gi|170661745|gb|EDT14428.1| thymidylate synthase, flavin-dependent [Clostridium perfringens E str. J...
gi|170710771, gi... - gi|170710771|gb|EDT22953.1| thymidylate synthase, flavin-dependent [Clostridium perfringens B str. A...
gi|110801337, gi... - gi|110801337|ref|YP_697114.1| FAD-dependent thymidylate synthase [Clostridium perfringens ATCC 13124...
THYX_CLOPE - Thymidylate synthase thyX OS=Clostridium perfringens GN=thyX PE=3 SV=1
242.0 [0..1] [198..2]

Back

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVTLMQHTS LTICAHAIRT CWQSFEKSDG GGEKDRELID RVGNKNKHAS TLEHLVYTFY  60
   61 IQGISRACLQ ELARHRIASL SVKSSRYTLK ELKAEEEFKE GDWERAKRYL VETESEAVNL 120
  121 ASLKALENLR QVLLLGISND MAKYCLPESY KTELTWTINA RALQNFLTLR SSKSALWEIR 180
  181 KLAKTLHEAL PKEHRYLFCL NQEG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.154902
Match: 2af6A
Description: Crystal structure of Mycobacterium tuberculosis Flavin dependent thymidylate synthase (Mtb ThyX) in the presence of co-factor FAD and substrate analog 5-Bromo-2'-Deoxyuridine-5'-Monophosphate (BrdUMP)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle