YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34556527
Organism:	Wolinella succinogenes DSM 1740
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34556527.

Description	E-value	Query Range	Subject Range
gi\|221318932 - gi\|221318932\|ref\|ZP_03600226.1\| hypothetical protein BsubsJ_09771 [Bacillus subtilis subsp. subtilis... gi\|221314010 - gi\|221314010\|ref\|ZP_03595815.1\| hypothetical protein BsubsN3_09857 [Bacillus subtilis subsp. subtili... gi\|221323206 - gi\|221323206\|ref\|ZP_03604500.1\| hypothetical protein BsubsS_09892 [Bacillus subtilis subsp. subtilis... YNEN_BACSU - Thioredoxin-like protein YneN OS=Bacillus subtilis (strain 168) GN=yneN PE=3 SV=1 YNEN_BACSU - Thioredoxin-like protein yneN OS=Bacillus subtilis GN=yneN PE=3 SV=1	137.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTLLSSLA LVTLLVLAGC DDKEGIKSEV ISQKRDTEAT KFSLELTDGH KLKVDRHEKG  60
   61 LHFEGEKGKV VLLNFFATWC PPCKAEIPHL VNLKSNYKDQ FEVVGVLMED SKTKGEIQKF 120
  121 IDTFDINFKI AISNENQKLA KALGGVKSIP FMILYDPQGN YFTHYVGAVP EEMIEFDIKR 180
  181 AMEKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	2b1kA
Description:	No description for 2b1kA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits