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View Structure Prediction Details

Protein: gi|33632747, gi|...
Organism: Synechococcus sp. WH 8102
Length: 143 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33632747, gi|....

Description E-value Query
Range
Subject
Range
gi|56684975, gi|... - gi|56750016|ref|YP_170717.1| DNA polymerase V [Synechococcus elongatus PCC 6301], gi|56684975|dbj|BA...
gi|46129952, gi|... - gi|81300358|ref|YP_400566.1| SOS mutagenesis protein UmuD [Synechococcus elongatus PCC 7942], gi|811...
166.0 [0..10] [143..53]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRHQPLPL QPRRTRLSLP LAGERVAAGF PSPADDYVEV GIDLNDQLIR HPTSTFFLRV  60
   61 SGESMLGAGI HDGDLLVVDR SLDPRPGRVV VAVLDGEFTL KRLVQHHGRL RLEAANPAYP 120
  121 PLELHRCGDV QIWGVAIHVI HPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.09691
Match: 1jhhA
Description: LexA repressor, N-terminal DNA-binding domain; LexA C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.131345342552043 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle