YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1062_HELHP
Organism:	Helicobacter hepaticus ATCC 51449
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1062_HELHP.

Description	E-value	Query Range	Subject Range
Y064_MYCVP - UPF0310 protein Mvan_0064 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0064 PE=3 S...	197.0	[0..1]	[133..1]
gi\|111611605, gi... - gi\|121611137\|ref\|YP_998944.1\| hypothetical protein Veis_4221 [Verminephrobacter eiseniae EF01-2], gi...	196.0	[0..2]	[135..5]
Y3206_RHILO, YW0... - (Q98GR7) Hypothetical UPF0310 protein msl3206, UPF0310 protein msl3206 OS=Rhizobium loti GN=msl3206 ... Y3206_RHILO - UPF0310 protein msl3206 OS=Rhizobium loti (strain MAFF303099) GN=msl3206 PE=3 SV=2	195.0	[0..2]	[132..3]
Y785_MYCGI - UPF0310 protein Mflv_0785 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_0785 PE=3 SV=1	191.0	[0..1]	[135..1]
gi\|86356484, gi\|... - gi\|86356484\|ref\|YP_468376.1\| hypothetical protein RHE_CH00838 [Rhizobium etli CFN 42], gi\|86280586\|g...	191.0	[0..2]	[133..3]
gi\|119692210, gi... - gi\|92915059\|ref\|ZP_01283684.1\| Protein of unknown function DUF55 [Mycobacterium sp. KMS], gi\|9244085... gi\|92433788, gi\|... - gi\|92909326\|ref\|ZP_01278104.1\| Protein of unknown function DUF55 [Mycobacterium sp. JLS], gi\|9243378... gi\|108797036, gi... - gi\|108797036\|ref\|YP_637233.1\| hypothetical protein Mmcs_0055 [Mycobacterium sp. MCS], gi\|108767455\|g...	188.0	[0..1]	[134..1]
gi\|54295949, gi\|... - gi\|54295949\|ref\|YP_122261.1\| hypothetical protein plpp0106 [Legionella pneumophila str. Paris], gi\|5...	183.0	[0..2]	[132..3]
Y442_STRMU - UPF0310 protein SMU_442 OS=Streptococcus mutans GN=SMU_442 PE=3 SV=1 Y442_STRMU - UPF0310 protein SMU_442 OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=SMU_442 P... gi\|254997947 - gi\|254997947\|dbj\|BAH88548.1\| hypothetical protein [Streptococcus mutans NN2025]	182.0	[0..1]	[133..2]
gi\|221312622 - gi\|221312622\|ref\|ZP_03594427.1\| hypothetical protein BsubsN3_02669 [Bacillus subtilis subsp. subtili... gi\|221317545 - gi\|221317545\|ref\|ZP_03598839.1\| hypothetical protein BsubsJ_02628 [Bacillus subtilis subsp. subtilis... YDCG_BACSU - UPF0310 protein ydcG OS=Bacillus subtilis GN=ydcG PE=3 SV=1 gi\|221321821 - gi\|221321821\|ref\|ZP_03603115.1\| hypothetical protein BsubsS_02699 [Bacillus subtilis subsp. subtilis... YDCG_BACSU - UPF0310 protein YdcG OS=Bacillus subtilis (strain 168) GN=ydcG PE=3 SV=1	177.0	[0..3]	[132..5]
YOUG_BACLI - UPF0310 protein in gntR 5'region OS=Bacillus licheniformis GN=oug PE=3 SV=1	174.0	[0..8]	[134..17]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYFIGIASK NHIQIGQAGG FCQLCHGKAA PLKRMKQNDK IIYYSPKLTM ESKEPYQAFT  60
   61 ALGEIADENV YQVEMFKGFF PFRRNVLWSE IKRECPLNVA KTHPEWKAYA SKLRFGHFEV 120
  121 SKEFFNFLAE YMTQDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	1wmmA
Description:	Crystal structure of PH1033 from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits