YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30250054, gi\|...
Organism:	Nitrosomonas europaea ATCC 19718
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30250054, gi|....

Description	E-value	Query Range	Subject Range
gi\|82703899, gi\|... - gi\|82703899\|ref\|YP_413464.1\| plasmid stabilization system protein [Nitrosospira multiformis ATCC 251...	112.0	[0..1]	[108..1]
gi\|23129548, gi\|... - gi\|23129548\|ref\|ZP_00111374.1\| COG3668: Plasmid stabilization system protein [Nostoc punctiforme PCC...	103.0	[0..5]	[97..6]
gi\|220963025, gi... - gi\|221233853\|ref\|YP_002516289.1\| toxin protein parE-1 [Caulobacter crescentus NA1000], gi\|220963025\|... PARE1_CAUCR - Toxin ParE1 OS=Caulobacter crescentus GN=parE1 PE=1 SV=1 PARE1_CAUCR - Toxin ParE1 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=parE1 PE=1 SV=1	102.0	[0..1]	[96..1]
gi\|254850477, gi... - gi\|254850477\|ref\|ZP_05239827.1\| plasmid stabilization element ParE [Vibrio cholerae MO10], gi\|254846... gi\|153819980, gi... - gi\|153819980\|ref\|ZP_01972647.1\| plasmid stabilization element ParE, putative [Vibrio cholerae NCTC 8... gi\|227011076, gi... - gi\|227811934\|ref\|YP_002811944.1\| putative plasmid stabilization element ParE [Vibrio cholerae M66-2]... gi\|153828459, gi... - gi\|153828459\|ref\|ZP_01981126.1\| putative plasmid stabilization element ParE [Vibrio cholerae 623-39]... gi\|229356810, gi... - gi\|229506459\|ref\|ZP_04395968.1\| hypothetical protein VCF_001676 [Vibrio cholerae BX 330286], gi\|2293... gi\|146313818, gi... - gi\|227119550\|ref\|YP_002821445.1\| plasmid stabilization element ParE, putative [Vibrio cholerae O395]... gi\|229353408, gi... - gi\|229509458\|ref\|ZP_04398940.1\| hypothetical protein VCE_000858 [Vibrio cholerae B33], gi\|229353408\|... gi\|229514815, gi... - gi\|229514815\|ref\|ZP_04404276.1\| hypothetical protein VCB_002467 [Vibrio cholerae TMA 21], gi\|2293487... gi\|229346626, gi... - gi\|229516745\|ref\|ZP_04406192.1\| hypothetical protein VCC_000763 [Vibrio cholerae RC9], gi\|229346626\|... gi\|229336185, gi... - gi\|229526086\|ref\|ZP_04415490.1\| hypothetical protein VCA_000194 [Vibrio cholerae bv. albensis VL426]... gi\|229334085, gi... - gi\|229527723\|ref\|ZP_04417114.1\| hypothetical protein VCG_000795 [Vibrio cholerae 12129(1)], gi\|22933... gi\|229605975, gi... - gi\|229605975\|ref\|YP_002876679.1\| hypothetical protein VCD_000924 [Vibrio cholerae MJ-1236], gi\|22937... gi\|15601123, gi\|... - gi\|9657759\|gb\|AAF96266.1\| plasmid stabilization element ParE, putative [Vibrio cholerae O1 biovar el... gi\|11355978 - pir\|\|F82467 probable plasmid stabilization element ParE VCA0359 [imported] - Vibrio cholerae (strain... gi\|75818892 - gi\|75818892\|ref\|ZP_00749006.1\| COG3668: Plasmid stabilization system protein [Vibrio cholerae V51] gi\|121631403, gi... - gi\|121726184\|ref\|ZP_01679482.1\| plasmid stabilization element ParE, putative [Vibrio cholerae V52], ... gi\|124120193, gi... - gi\|153220965\|ref\|ZP_01952047.1\| plasmid stabilization element ParE, putative [Vibrio cholerae MAK 75...	101.0	[0..1]	[96..1]
gi\|134150290, gi... - gi\|254364776\|ref\|ZP_04980822.1\| conserved hypothetical protein [Mycobacterium tuberculosis str. Haar... gi\|148661766, gi... - gi\|167970524\|ref\|ZP_02552801.1\| hypothetical protein MtubH3_21823 [Mycobacterium tuberculosis H37Ra]... gi\|255096745 - gi\|255096745\|ref\|ZP_05326223.1\| hypothetical protein MtubK_11035 [Mycobacterium tuberculosis KZN 605... gi\|254815757 - gi\|254815757\|ref\|ZP_05220758.1\| hypothetical protein MtubKZN_08352 [Mycobacterium tuberculosis KZN 4... gi\|254550976 - gi\|254550976\|ref\|ZP_05141423.1\| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi\|253320498, gi... - gi\|253798995\|ref\|YP_003031996.1\| toxin [Mycobacterium tuberculosis KZN 1435], gi\|253320498\|gb\|ACT251... PARE1_MYCTU - Toxin ParE1 OS=Mycobacterium tuberculosis GN=parE1 PE=1 SV=2 PARE1_MYCTU - Toxin ParE1 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=parE1 PE=1 SV=1 gi\|31793151, gi\|... - gi\|31793151\|ref\|NP_855644.1\| hypothetical protein Mb1994c [Mycobacterium bovis AF2122/97], gi\|316187... gi\|121493511, gi... - gi\|121637864\|ref\|YP_978087.1\| hypothetical protein BCG_1998c [Mycobacterium bovis BCG str. Pasteur 1... gi\|215404250 - gi\|215404250\|ref\|ZP_03416431.1\| hypothetical protein Mtub0_11315 [Mycobacterium tuberculosis 02_1987... gi\|215411638 - gi\|215411638\|ref\|ZP_03420434.1\| hypothetical protein Mtub9_09964 [Mycobacterium tuberculosis 94_M424... gi\|215427315 - gi\|215427315\|ref\|ZP_03425234.1\| hypothetical protein MtubT9_13379 [Mycobacterium tuberculosis T92] gi\|215430866 - gi\|215430866\|ref\|ZP_03428785.1\| hypothetical protein MtubE_09350 [Mycobacterium tuberculosis EAS054] gi\|218753668 - gi\|218753668\|ref\|ZP_03532464.1\| hypothetical protein MtubG1_09599 [Mycobacterium tuberculosis GM 150... PARE1_MYCTO - Toxin ParE1 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=parE1 PE=3 SV=1 gi\|119701791, gi... - gi\|76784164\|ref\|ZP_00771350.1\| COG3668: Plasmid stabilization system protein [Mycobacterium tubercul... gi\|219557911 - gi\|219557911\|ref\|ZP_03536987.1\| hypothetical protein MtubT1_11642 [Mycobacterium tuberculosis T17] gi\|81254153, gi\|... - gi\|81254153\|ref\|ZP_00878680.1\| COG3668: Plasmid stabilization system protein [Mycobacterium tubercul... gi\|224990348, gi... - gi\|224990348\|ref\|YP_002645035.1\| hypothetical protein JTY_1982 [Mycobacterium bovis BCG str. Tokyo 1...	100.0	[0..3]	[96..4]
tr\|D7HCY8\|D7HCY8... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03200 PE=4 SV=1 gi\|75821645, gi\|... - gi\|75821645\|ref\|ZP_00751467.1\| COG3668: Plasmid stabilization system protein [Vibrio cholerae RC385]...	99.0	[0..1]	[96..1]
gi\|30248281, gi\|... - gi\|30248281\|ref\|NP_840351.1\| putative plasmid stabilization element ParE [Nitrosomonas europaea ATCC...	98.0	[0..1]	[96..1]
gi\|88793662, gi\|... - gi\|88793662\|ref\|ZP_01109376.1\| plasmid stabilization element ParE, putative [Alteromonas macleodii '...	97.0	[0..1]	[92..1]
gi\|126466806, gi... - gi\|126466806\|gb\|ABO14185.1\| ParE1 [Vibrio vulnificus], gi\|126466791\|gb\|ABO14175.1\| ParE1 [Vibrio vul... gi\|229339858, gi... - gi\|229523008\|ref\|ZP_04412420.1\| plasmid stabilization element ParE [Vibrio cholerae TM 11079-80], gi... gi\|27365828, gi\|... - gi\|27365828\|ref\|NP_761356.1\| plasmid stabilization element ParE [Vibrio vulnificus CMCP6], gi\|273619...	97.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHYLLSPEA KTDITNIRQY TTQQWGKTQA DKYILRLRER MRWLADNPML GRARDEIKEG  60
   61 YRSFSEGDHV IFYRMAGSAI EVIGIPHQNM DIEQNLSSGN LLLPDIADYE PEDG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.53
Match:	1wmiA
Description:	Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits