YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1032_NITEU
Organism:	Nitrosomonas europaea ATCC 19718
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1032_NITEU.

Description	E-value	Query Range	Subject Range
gi\|37200483, gi\|... - gi\|37675943\|ref\|NP_936339.1\| hypothetical protein VVA0283 [Vibrio vulnificus YJ016], gi\|37200483\|dbj...	150.0	[0..1]	[106..16]
Y734_NITMU - UPF0145 protein Nmul_A0734 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A07...	149.0	[0..1]	[106..1]
gi\|18073211 - gi\|18073211\|emb\|CAC80661.1\| hypothetical protein (conserved) [Listeria ivanovii]	149.0	[0..1]	[106..11]
gi\|118723107, gi... - gi\|18073203\|emb\|CAC80654.1\| hypothetical protein (conserved) [Listeria innocua], gi\|118723123\|gb\|ABL...	149.0	[0..1]	[106..11]
Y2666_ERWCT - UPF0145 protein ECA2666 OS=Erwinia carotovora subsp. atroseptica GN=ECA2666 PE=3 SV=1 Y2666_PECAS - UPF0145 protein ECA2666 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA2666 ...	147.0	[0..1]	[105..1]
gi\|83945197, gi\|... - gi\|83945197\|ref\|ZP_00957546.1\| hypothetical protein OA2633_00480 [Oceanicaulis alexandrii HTCC2633],...	147.0	[0..1]	[105..1]
tr\|A2PRH7\|A2PRH7... - UPF0145 protein DN30_169 OS=Vibrio cholerae GN=DN30_169 PE=3 SV=1, UPF0145 protein A51_C0935 OS=Vibr... gi\|229336657, gi... - gi\|229526499\|ref\|ZP_04415903.1\| hypothetical protein VCA_000627 [Vibrio cholerae bv. albensis VL426]... gi\|229514363, gi... - gi\|229514363\|ref\|ZP_04403824.1\| hypothetical protein VCB_002013 [Vibrio cholerae TMA 21], gi\|2293483... gi\|125622808, gi... - gi\|75821030\|ref\|ZP_00751066.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|153801413, gi... - gi\|153801413\|ref\|ZP_01955999.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123079...	147.0	[0..1]	[106..1]
gi\|45602891, gi\|... - gi\|45602898\|gb\|AAS72334.1\| hypothetical protein [Listeria seeligeri], gi\|45602891\|gb\|AAS72328.1\| hyp...	147.0	[0..1]	[106..1]
Y206_LISMC - UPF0145 protein Lm4b_00206 OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=Lm4b_00206 PE... Y208_LISMO - UPF0145 protein lmo0208 OS=Listeria monocytogenes GN=lmo0208 PE=3 SV=1 gi\|254832471, gi... - gi\|254832471\|ref\|ZP_05237126.1\| hypothetical protein Lmon1_14036 [Listeria monocytogenes 10403S], gi... gi\|133728491, gi... - gi\|254873783\|ref\|ZP_05246493.1\| hypothetical protein LmonocytogFSL_13522 [Listeria monocytogenes FSL... Y2435_LISMH - UPF0145 protein LMHCC_2435 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=LMHCC_2435 PE=3 S... gi\|133731378, gi... - gi\|254829299\|ref\|ZP_05233986.1\| hypothetical protein LmonocytogeFSL_12633 [Listeria monocytogenes FS... gi\|224500341 - gi\|224500341\|ref\|ZP_03668690.1\| hypothetical protein LmonF1_11994 [Listeria monocytogenes Finland 19... gi\|133736592, gi... - gi\|254933048\|ref\|ZP_05266407.1\| hypothetical protein LmonH_11477 [Listeria monocytogenes HPB2262], g... gi\|238800548 - gi\|238800548\|gb\|ACR56094.1\| unknown [Listeria marthii] gi\|255520470 - gi\|255520470\|ref\|ZP_05387707.1\| hypothetical protein LmonocFSL_04436 [Listeria monocytogenes FSL J1-... gi\|255026023 - gi\|255026023\|ref\|ZP_05298009.1\| hypothetical protein LmonocytFSL_06125 [Listeria monocytogenes FSL J... gi\|255023168 - gi\|255023168\|ref\|ZP_05295154.1\| hypothetical protein LmonocyFSL_06345 [Listeria monocytogenes FSL J1... gi\|254992626 - gi\|254992626\|ref\|ZP_05274816.1\| hypothetical protein LmonocytoFSL_05861 [Listeria monocytogenes FSL ... gi\|254880520 - gi\|254880520\|ref\|ZP_05253230.1\| hypothetical protein LmonFSL_15073 [Listeria monocytogenes FSL J2-07... gi\|254854438 - gi\|254854438\|ref\|ZP_05243786.1\| hypothetical protein LmonoFSL_14460 [Listeria monocytogenes FSL R2-5... gi\|254825878 - gi\|254825878\|ref\|ZP_05230879.1\| hypothetical protein LmonFS_11949 [Listeria monocytogenes FSL J1-194... gi\|224503472 - gi\|224503472\|ref\|ZP_03671779.1\| hypothetical protein LmonFR_13342 [Listeria monocytogenes FSL R2-561... Y206_LISMC - UPF0145 protein Lm4b_00206 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=Lm4b_00206 PE... Y240_LISIN - UPF0145 protein lin0240 OS=Listeria innocua GN=lin0240 PE=3 SV=1 gi\|47018457, gi\|... - gi\|47093150\|ref\|ZP_00230925.1\| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858]... Y240_LISIN - UPF0145 protein lin0240 OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=lin0240 PE=3 SV=1 Y208_LISMO - UPF0145 protein lmo0208 OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=lmo0... Y219_LISMF - UPF0145 protein LMOf2365_0219 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_0219 ...	147.0	[0..1]	[106..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTTTPVIE GKRITHYYGI VAGEAVLGAN VLKDLFAGIR DFVGGRSGTY EKELQHAREI  60
   61 ALEELQENAH RLGANAVIGI DIDYEVLGKE NGMLMVSVSG TAVFVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	1y2iA
Description:	Crystal Structure of MCSG Target APC27401 from Shigella flexneri
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits