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View Structure Prediction Details

Protein: RS6_NITEU
Organism: Nitrosomonas europaea ATCC 19718
Length: 146 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_NITEU.

Description E-value Query
Range		 Subject
Range
RS6_XANC8 - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsF PE=3 SV=1
RS6_XANCP - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NC...
RS6_XANCP - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris GN=rpsF PE=3 SV=1
 167.0 [0..2] [142..3]

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Predicted Domain #1
Region A:
Residues: [1-146] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFIV HPDQSEQVSA MTERYSNIVT GRSGKIHRLE DWGRRQLTYP IQKLHKAHYV  60
   61 LMNIECDQES LNELEHSFKF NDAILRHLVI RMNGPITTPS PMMQEGKSRP PHSSDEDSEN 120
  121 TAPAKAKTAD SPGEDTRTTE ESDPKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.09691
Match: 1p6gF
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.72663177460478 bayes_pls_golite062009
structural molecule activity 9.15324307340032 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle