YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30043876, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30043876, gi|....

Description	E-value	Query Range	Subject Range
gi\|81243772, gi\|... - gi\|82779624\|ref\|YP_405973.1\| nucleotidase [Shigella dysenteriae Sd197], gi\|81243772\|gb\|ABB64482.1\| p...	187.0	[0..1]	[225..1]
gi\|117626686, gi... - gi\|117626686\|ref\|YP_860009.1\| nucleotidase [Escherichia coli APEC O1], gi\|115515810\|gb\|ABJ03885.1\| c... gi\|218359165, gi... - gi\|218551623\|ref\|YP_002385415.1\| nucleotidase [Escherichia fergusonii ATCC 35469], gi\|218359165\|emb\|... gi\|215267757, gi... - gi\|215489685\|ref\|YP_002332116.1\| nucleotidase [Escherichia coli O127:H6 str. E2348/69], gi\|215267757... gi\|218698210, gi... - gi\|218698210\|ref\|YP_002405877.1\| nucleotidase [Escherichia coli 55989], gi\|218354942\|emb\|CAV02166.1\|... gi\|75515564, gi\|... - gi\|75515564\|ref\|ZP_00737721.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli 5363... gi\|218430325, gi... - gi\|218692761\|ref\|YP_002400973.1\| nucleotidase [Escherichia coli ED1a], gi\|218430325\|emb\|CAV18205.1\| ... gi\|227885140, gi... - gi\|227885140\|ref\|ZP_04002945.1\| nucleotidase [Escherichia coli 83972], gi\|227837969\|gb\|EEJ48435.1\| n... gi\|75236060, gi\|... - gi\|75236060\|ref\|ZP_00720186.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli F11]... gi\|218708051, gi... - gi\|218708051\|ref\|YP_002415570.1\| nucleotidase [Escherichia coli UMN026], gi\|218435148\|emb\|CAR16106.1... gi\|75229433, gi\|... - gi\|75229433\|ref\|ZP_00715983.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli B7A]... gi\|218703066, gi... - gi\|218703066\|ref\|YP_002410695.1\| nucleotidase [Escherichia coli IAI39], gi\|218373052\|emb\|CAR20942.1\|... gi\|170683179, gi... - gi\|170683179\|ref\|YP_001746828.1\| 5-nucleotidase YjjG [Escherichia coli SMS-3-5], gi\|170520897\|gb\|ACB... gi\|26251260, gi\|... - gi\|26251260\|ref\|NP_757300.1\| nucleotidase [Escherichia coli CFT073], gi\|26111693\|gb\|AAN83874.1\|AE016... gi\|91214028, gi\|... - gi\|91214028\|ref\|YP_544014.1\| nucleotidase [Escherichia coli UTI89], gi\|91075602\|gb\|ABE10483.1\| hypot... gi\|110346402, gi... - gi\|110644810\|ref\|YP_672540.1\| nucleotidase [Escherichia coli 536], gi\|110346402\|gb\|ABG72639.1\| hypot...	186.0	[0..1]	[225..1]
gi\|15834586, gi\|... - gi\|15834586\|ref\|NP_313359.1\| nucleotidase [Escherichia coli O157:H7 str. Sakai], gi\|13364810\|dbj\|BAB... EG12115 - dUMP phosphatase / Noncanonical pyrimidine nucleotide house-cleaning phosphatase; dUMP phosphatase a... YJJG_ECOLI - 5'-nucleotidase yjjG (EC 3.1.3.5) (Nucleoside 5'-monophosphate phosphohydrolase) - Escherichia coli gi\|170083759, gi... - gi\|170083759\|ref\|YP_001733079.1\| hydrolase [Escherichia coli str. K-12 substr. DH10B], gi\|169891594\|... gi\|195937645 - gi\|195937645\|ref\|ZP_03083027.1\| nucleotidase [Escherichia coli O157:H7 str. EC4024] gi\|208807989, gi... - gi\|208807989\|ref\|ZP_03250326.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|208734874, gi... - gi\|208813597\|ref\|ZP_03254926.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208741574, gi... - gi\|208821451\|ref\|ZP_03261771.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|209398693, gi... - gi\|209398693\|ref\|YP_002273894.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|217320447, gi... - gi\|217324226\|ref\|ZP_03440310.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|218561549, gi... - gi\|218561549\|ref\|YP_002394462.1\| nucleotidase [Escherichia coli S88], gi\|218368318\|emb\|CAR06137.1\| d... gi\|168750991, gi... - gi\|188014932\|gb\|EDU53054.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4113], gi\|168750991... gi\|189356064, gi... - gi\|189356064\|gb\|EDU74483.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4401], gi\|168756790... gi\|168762723, gi... - gi\|189366962\|gb\|EDU85378.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4501], gi\|168762723... gi\|168766653, gi... - gi\|189363985\|gb\|EDU82404.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4486], gi\|168766653... gi\|187768030, gi... - gi\|187768030\|gb\|EDU31874.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4196], gi\|168776650... gi\|189000676, gi... - gi\|189000676\|gb\|EDU69662.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC4076], gi\|168781661... gi\|189374948, gi... - gi\|189374948\|gb\|EDU93364.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC869], gi\|168785015\|... gi\|189379551, gi... - gi\|189379551\|gb\|EDU97967.1\| 5-nucleotidase YjjG [Escherichia coli O157:H7 str. EC508], gi\|168797944\|... gi\|254595769, gi... - gi\|254796369\|ref\|YP_003081206.1\| predicted hydrolase [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|254164299, gi... - gi\|254164299\|ref\|YP_003047409.1\| nucleotidase [Escherichia coli B str. REL606], gi\|253976202\|gb\|ACT4... gi\|253774997, gi... - gi\|254291050\|ref\|YP_003056800.1\| nucleotidase [Escherichia coli BL21(DE3)], gi\|253980359\|gb\|ACT46029... gi\|242379895, gi... - gi\|251787622\|ref\|YP_003001926.1\| hypothetical protein B21_04215 [Escherichia coli BL21], gi\|24237989... gi\|238903460, gi... - gi\|238903460\|ref\|YP_002929256.1\| dUMP phosphatase [Escherichia coli BW2952], gi\|238861017\|gb\|ACR6301... gi\|89111081, gi\|... - gi\|89111081\|ref\|AP_004861.1\| predicted hydrolase [Escherichia coli str. K-12 substr. W3110], gi\|8567... YJJG_ECO57 - Pyrimidine 5'-nucleotidase YjjG OS=Escherichia coli O157:H7 GN=yjjG PE=3 SV=1 EG12115 - dUMP phosphatase / Noncanonical pyrimidine nucleotide house-cleaning phosphatase; dUMP phosphatase a... gi\|15804945, gi\|... - gi\|15804945\|ref\|NP_290987.1\| nucleotidase [Escherichia coli O157:H7 EDL933], gi\|12519397\|gb\|AAG59554... gi\|194421765, gi... - gi\|83585281\|ref\|ZP_00923929.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli 101-...	186.0	[0..1]	[225..1]
gi\|110808163, gi... - gi\|110808163\|ref\|YP_691683.1\| nucleotidase [Shigella flexneri 5 str. 8401], gi\|110617711\|gb\|ABF06378... gi\|73858285, gi\|... - gi\|74314808\|ref\|YP_313227.1\| nucleotidase [Shigella sonnei Ss046], gi\|73858285\|gb\|AAZ90992.1\| putati...	184.0	[0..1]	[225..1]
gi\|209915098, gi... - gi\|209921839\|ref\|YP_002295923.1\| nucleotidase [Escherichia coli SE11], gi\|209915098\|dbj\|BAG80172.1\| ... gi\|226840490, gi... - gi\|254037384\|ref\|ZP_04871461.1\| dUMP phosphatase [Escherichia sp. 1_1_43], gi\|226840490\|gb\|EEH72492.... gi\|218363677, gi... - gi\|218556908\|ref\|YP_002389822.1\| nucleotidase [Escherichia coli IAI1], gi\|218363677\|emb\|CAR01336.1\| ... gi\|237704110, gi... - gi\|237704110\|ref\|ZP_04534591.1\| nucleotidase [Escherichia sp. 3_2_53FAA], gi\|226902022\|gb\|EEH88281.1... gi\|193065657, gi... - gi\|75256285\|ref\|ZP_00727957.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli E22]... gi\|75234536, gi\|... - gi\|75234536\|ref\|ZP_00718877.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli E110... gi\|75209577 - gi\|75209577\|ref\|ZP_00709795.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli B171... gi\|157163821, gi... - gi\|75198188\|ref\|ZP_00708258.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli HS],... gi\|75189082, gi\|... - gi\|75189082\|ref\|ZP_00702349.1\| COG1011: Predicted hydrolase (HAD superfamily) [Escherichia coli E243...	184.0	[0..1]	[225..1]
gi\|194468523, gi... - gi\|194468523\|ref\|ZP_03074507.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ken... gi\|194449902, gi... - gi\|194449902\|ref\|YP_002048579.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194402512, gi... - gi\|194443849\|ref\|YP_002043800.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ne... gi\|39546407 - gi\|39546407\|ref\|NP_463415.2\| nucleotidase [Salmonella typhimurium LT2] lcl\|NC_016856.1_... - [gene=yjjG] [protein=nucleotidase] [protein_id=YP_005240901.1] [location=4825952..4826629] gi\|207859685, gi... - gi\|207859685\|ref\|YP_002246336.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Enteritid... gi\|205360036, gi... - gi\|205360036\|ref\|ZP_02834100.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Wel... gi\|205359371, gi... - gi\|205359371\|ref\|ZP_02669478.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Hei... gi\|205358320, gi... - gi\|205358320\|ref\|ZP_02655261.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ken... gi\|205357522, gi... - gi\|205357522\|ref\|ZP_02570898.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar 4,[... gi\|204323685, gi... - gi\|204927020\|ref\|ZP_03218222.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Jav... gi\|200387752, gi... - gi\|200387752\|ref\|ZP_03214364.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Vir... gi\|198242931, gi... - gi\|198242931\|ref\|YP_002218433.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Du... gi\|197300661, gi... - gi\|197300661\|ref\|ZP_02659751.2\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sch... gi\|197239981, gi... - gi\|197261726\|ref\|ZP_03161800.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sai... gi\|197212788, gi... - gi\|197249085\|ref\|YP_002149500.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Ag... gi\|194734990, gi... - gi\|194734990\|ref\|YP_002117473.1\| 5-nucleotidase YjjG [Salmonella enterica subsp. enterica serovar Sc...	183.0	[0..1]	[225..1]
gi\|197365256, gi... - gi\|197365256\|ref\|YP_002144893.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Paratyphi... gi\|56130590, gi\|... - gi\|56416333\|ref\|YP_153408.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Paratyphi A s...	182.0	[0..1]	[225..2]
gi\|62182977, gi\|... - gi\|62182977\|ref\|YP_219394.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Choleraesuis ... gi\|224470908, gi... - gi\|224586380\|ref\|YP_002640179.1\| nucleotidase [Salmonella enterica subsp. enterica serovar Paratyphi...	182.0	[0..1]	[225..2]
gi\|91191157, gi\|... - gi\|91224246\|ref\|ZP_01259509.1\| nucleotidase [Vibrio alginolyticus 12G01], gi\|91191157\|gb\|EAS77423.1\|... gi\|28900072, gi\|... - gi\|28900072\|ref\|NP_799727.1\| nucleotidase [Vibrio parahaemolyticus RIMD 2210633], gi\|28808355\|dbj\|BA... gi\|28808355 - gi\|28808355\|dbj\|BAC61560.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]	182.0	[0..1]	[222..1]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWDWIFFDA DETLFTFDSF TGLQRMFLDY SVTFTAEDFQ DYQAVNKPLW VDYQNGAITS  60
   61 LQLQHGRFES WAERLKVEAG LLNDAFINAM AEICTPLPGA VSLLNAIRSN AKIGIITNGF 120
  121 SALQQVRLER TGLRDYFDLL VISEEVGVAK PNKKIFDYAL EQAGNPDRSR VLMVGDTAES 180
  181 DILGGINAGL ATCWLNAHNR EQPEGIAPTW TVSSLHELEQ LLCKH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2hoqA
Description:	No description for 2hoqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits