YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30043854, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30043854, gi|....

Description	E-value	Query Range	Subject Range
gi\|27479658 - gi\|27479658\|gb\|AAO17185.1\| HpaI [Photorhabdus luminescens]	226.0	[0..1]	[263..4]
gi\|36784398, gi\|... - gi\|37524972\|ref\|NP_928316.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Photorhabdus luminesce...	221.0	[0..1]	[252..4]
gi\|15603400, gi\|... - gi\|15603400\|ref\|NP_246474.1\| HpaI [Pasteurella multocida subsp. multocida str. Pm70], gi\|12721924\|gb...	216.0	[0..1]	[262..1]
HPCH_SHISS - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella sonnei (strain Ss046) GN=hpcH PE=3 SV=1	214.0	[0..1]	[258..1]
HPCH_ECOHS - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli O9:H4 (strain HS) GN=hpcH PE=3 SV=1	213.0	[0..1]	[258..1]
gi\|193063726, gi... - gi\|75258430\|ref\|ZP_00729861.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia...	213.0	[0..1]	[258..1]
HPCH_ECOLX - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli GN=hpcH PE=1 SV=1 HPCH_ECOLC - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... gi\|75515540, gi\|... - gi\|75515540\|ref\|ZP_00737697.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... HPCH_ECOSE - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Escherichia coli (strain SE11) GN=hpcH PE=3 SV=1 gi\|124498498, gi... - gi\|124531566\|ref\|ZP_01701797.1\| 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia coli B]...	213.0	[0..1]	[258..1]
EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase EG14083 - 2-keto-3-deoxy-L-rhamnonate aldolase / 2-keto-3-deoxy-L-rhamnonate aldolase gi\|253974157, gi... - gi\|254162256\|ref\|YP_003045364.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... YFAU_ECOLI - Hypothetical protein yfaU - Escherichia coli gi\|75512721, gi\|... - gi\|75512721\|ref\|ZP_00735223.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... gi\|124501885, gi... - gi\|124526414\|ref\|ZP_01698367.1\| 2-dehydro-3-deoxyglucarate aldolase [Escherichia coli B], gi\|1245018... gi\|254289017, gi... - gi\|254289017\|ref\|YP_003054765.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escheric... gi\|89109062, gi\|... - gi\|89109062\|ref\|AP_002842.1\| predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia ... gi\|251785606, gi... - gi\|251785606\|ref\|YP_002999910.1\| hypothetical protein B21_02130 [Escherichia coli BL21], gi\|24237787... RHMA_ECOBW - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=rhmA PE=3... RHMA_ECOLC - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=r... gi\|83588231, gi\|... - gi\|83588231\|ref\|ZP_00926856.1\| COG3836: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Escherichia... RHMA_ECODH - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain K12 / DH10B) GN=rhmA PE=3 SV=1 RHMA_ECOHS - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O9:H4 (strain HS) GN=rhmA PE=3 SV=1	213.0	[0..1]	[251..5]
RHMA_ECOUT - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli (strain UTI89 / UPEC) GN=rhmA PE=3 SV=1 gi\|227835654, gi... - gi\|227887304\|ref\|ZP_04005109.1\| aldolase [Escherichia coli 83972], gi\|227835654\|gb\|EEJ46120.1\| aldol... RHMA_ECO81 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O81 (strain ED1a) GN=rhmA PE=3 SV=1 RHMA_ECOK1 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O1:K1 / APEC GN=rhmA PE=3 SV=1 gi\|226901089, gi... - gi\|237704723\|ref\|ZP_04535204.1\| 2-keto-3-deoxy-L-rhamnonate aldolase [Escherichia sp. 3_2_53FAA], gi... RHMA_ECOL6 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) ... RHMA_ECOL6, KDRA... - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O6 GN=rhmA PE=3 SV=1, 2-keto-3-deoxy-L-rham... RHMA_ECO45 - 2-keto-3-deoxy-L-rhamnonate aldolase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhmA PE=3 SV...	213.0	[0..1]	[251..5]
HPCH_SHIB3 - 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5...	212.0	[0..1]	[258..1]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSFKAALK AGRPQIGLWL GLSSSYSAEL LAGPGFDWLL IDGEHAPNNV QTVLTQLQAI  60
   61 APYPSQPVVR PSWNDPVQIK QLLDVGTQTL LVPMVQNADE ARKAVRATRY PPAGIRGVGS 120
  121 ALARASRWNR IPDYLQKAND QMCVLVQIET REAMKNLPQI LDVEGVDGVF IGPADLSADM 180
  181 GYAGNPQHPE VQAAIEQAIV QIREAGKAPG ILIANEQLAK RYLELGALFV AVGVDTTLLA 240
  241 RAAEALAARF GNSSSISMAK QNNNSVY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	2v5jA
Description:	No description for 2v5jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits