YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30065352, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30065352, gi|....

Description	E-value	Query Range	Subject Range
gi\|213418162 - gi\|213418162\|ref\|ZP_03351228.1\| hypothetical protein Salmonentericaenterica_09712 [Salmonella enteri... gi\|213053377 - gi\|213053377\|ref\|ZP_03346255.1\| hypothetical protein Salmoneentericaenterica_10896 [Salmonella enter... gi\|213023383 - gi\|213023383\|ref\|ZP_03337830.1\| hypothetical protein Salmonelentericaenterica_12762 [Salmonella ente... gi\|206710515, gi... - gi\|207858712\|ref\|YP_002245363.1\| hypothetical protein SEN3298 [Salmonella enterica subsp. enterica s... gi\|213649008 - gi\|213649008\|ref\|ZP_03379061.1\| hypothetical protein SentesTy_18033 [Salmonella enterica subsp. ente... gi\|213621898 - gi\|213621898\|ref\|ZP_03374681.1\| hypothetical protein SentesTyp_31991 [Salmonella enterica subsp. ent... gi\|213581582 - gi\|213581582\|ref\|ZP_03363408.1\| hypothetical protein SentesTyph_10407 [Salmonella enterica subsp. en... gi\|213426758 - gi\|213426758\|ref\|ZP_03359508.1\| hypothetical protein SentesTyphi_14800 [Salmonella enterica subsp. e... gi\|194709581, gi... - gi\|194734079\|ref\|YP_002116414.1\| hypothetical protein SeSA_A3668 [Salmonella enterica subsp. enteric... gi\|194457863, gi... - gi\|194471499\|ref\|ZP_03077483.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194410181, gi... - gi\|194451877\|ref\|YP_002047494.1\| hypothetical protein SeHA_C3776 [Salmonella enterica subsp. enteric... gi\|168818720, gi... - gi\|205344509\|gb\|EDZ31273.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205354903, gi... - gi\|205354903\|ref\|YP_002228704.1\| hypothetical protein SG3968 [Salmonella enterica subsp. enterica se... gi\|197939433, gi... - gi\|198244917\|ref\|YP_002217432.1\| hypothetical protein SeD_A3839 [Salmonella enterica subsp. enterica... gi\|197364319, gi... - gi\|197364319\|ref\|YP_002143956.1\| hypothetical protein SSPA3115 [Salmonella enterica subsp. enterica ... gi\|197215037, gi... - gi\|197251334\|ref\|YP_002148390.1\| hypothetical protein SeAg_B3668 [Salmonella enterica subsp. enteric... gi\|214000208 - gi\|214000208\|ref\|ZP_03410943.1\| hypothetical protein Salmonellentericaenterica_05951 [Salmonella ent... gi\|213975174 - gi\|213975174\|ref\|ZP_03402433.1\| hypothetical protein Salmonellaentericaenterica_11663 [Salmonella en... gi\|213864795 - gi\|213864795\|ref\|ZP_03386914.1\| hypothetical protein SentesT_33425 [Salmonella enterica subsp. enter... gi\|16762814 - gi\|16762814\|ref\|NP_458431.1\| hypothetical protein STY4325 [Salmonella enterica subsp. enterica serov... gi\|16505120, gi\|... - gi\|25511937\|pir\|\|AB1002 conserved hypothetical protein yhfG [imported] - Salmonella enterica subsp. ... gi\|29139938, gi\|... - gi\|29144301\|ref\|NP_807643.1\| hypothetical protein t4034 [Salmonella enterica subsp. enterica serovar... gi\|56415389, gi\|... - gi\|56415389\|ref\|YP_152464.1\| hypothetical protein SPA3337 [Salmonella enterica subsp. enterica serov... gi\|205325551, gi... - gi\|205325551\|gb\|EDZ13390.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|238913595 - gi\|238913595\|ref\|ZP_04657432.1\| hypothetical protein SentesTe_21033 [Salmonella enterica subsp. ente... gi\|205350155, gi... - gi\|205350155\|gb\|EDZ36786.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168241605, gi... - gi\|205338934\|gb\|EDZ25698.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168235059, gi... - gi\|197291609\|gb\|EDY30961.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168232601, gi... - gi\|205333132\|gb\|EDZ19896.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero...	73.0	[0..1]	[55..1]
YHFG_SALTY - Uncharacterized protein yhfG OS=Salmonella typhimurium GN=yhfG PE=4 SV=1 gi\|200387790, gi... - gi\|200387790\|ref\|ZP_03214402.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YHFG_SALTY - Uncharacterized protein YhfG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yhfG... lcl\|NC_016856.1_... - [gene=yhfG] [protein=hypothetical protein] [protein_id=YP_005239664.1] [location=complement(3634805.... gi\|195632264, gi... - gi\|195632264\|gb\|EDX50748.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197242760, gi... - gi\|197264505\|ref\|ZP_03164579.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YHFG_SALTY - Uncharacterized protein yhfG OS=Salmonella typhimurium GN=yhfG PE=4 SV=1	73.0	[0..1]	[55..1]
gi\|81242791, gi\|... - gi\|82778643\|ref\|YP_404992.1\| hypothetical protein SDY_3524 [Shigella dysenteriae Sd197], gi\|81242791... YHFG_ECOLI - Hypothetical protein yhfG - Escherichia coli gi\|218353775, gi... - gi\|218697043\|ref\|YP_002404710.1\| hypothetical protein EC55989_3768 [Escherichia coli 55989], gi\|2183... YHFG_ECO57 - Uncharacterized protein YhfG OS=Escherichia coli O157:H7 GN=yhfG PE=4 SV=1 EG12374 - putative antitoxin for Fic / Putative antitoxin for Fic gi\|15803876, gi\|... - gi\|15803876\|ref\|NP_289910.1\| hypothetical protein Z4723 [Escherichia coli O157:H7 EDL933], gi\|125179... gi\|89110647, gi\|... - gi\|89110647\|ref\|AP_004427.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|13363686, gi\|... - gi\|15833467\|ref\|NP_312240.1\| hypothetical protein ECs4213 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195934860 - gi\|195934860\|ref\|ZP_03080242.1\| hypothetical protein EscherichcoliO157_00110 [Escherichia coli O157:... gi\|254795286, gi... - gi\|254795286\|ref\|YP_003080123.1\| hypothetical protein ECSP_4320 [Escherichia coli O157:H7 str. TW143... gi\|170082880, gi... - gi\|170082880\|ref\|YP_001732200.1\| hypothetical protein ECDH10B_3538 [Escherichia coli str. K-12 subst... gi\|238902454, gi... - gi\|238902454\|ref\|YP_002928250.1\| hypothetical protein BWG_3054 [Escherichia coli BW2952], gi\|2388629... gi\|189380105, gi... - gi\|189380105\|gb\|EDU98521.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189374675, gi... - gi\|189374675\|gb\|EDU93091.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|209158601, gi... - gi\|209397201\|ref\|YP_002272804.1\| hypothetical protein ECH74115_4672 [Escherichia coli O157:H7 str. E... gi\|208738298, gi... - gi\|208818175\|ref\|ZP_03258495.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208813932, gi... - gi\|208813932\|ref\|ZP_03255261.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208725553, gi... - gi\|208805752\|ref\|ZP_03248089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|188014198, gi... - gi\|188014198\|gb\|EDU52320.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... EG12374 - putative antitoxin for Fic / Putative antitoxin for Fic gi\|189002602, gi... - gi\|189002602\|gb\|EDU71588.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772740, gi... - gi\|187771628\|gb\|EDU35472.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189364416, gi... - gi\|189364416\|gb\|EDU82835.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189359314, gi... - gi\|189359314\|gb\|EDU77733.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	72.0	[0..1]	[55..1]
gi\|81247124, gi\|... - gi\|82545713\|ref\|YP_409660.1\| hypothetical protein SBO_3344 [Shigella boydii Sb227], gi\|81247124\|gb\|A...	71.0	[0..1]	[55..1]
gi\|227839377, gi... - gi\|227883498\|ref\|ZP_04001303.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783937... gi\|215488649, gi... - gi\|215488649\|ref\|YP_002331080.1\| hypothetical protein E2348C_3612 [Escherichia coli O127:H6 str. E23... gi\|226902359, gi... - gi\|237703095\|ref\|ZP_04533576.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226902359\|gb\|EEH88... gi\|110345194, gi... - gi\|110643602\|ref\|YP_671332.1\| hypothetical protein ECP_3453 [Escherichia coli 536], gi\|110345194\|gb\|... gi\|91212839, gi\|... - gi\|91212839\|ref\|YP_542825.1\| hypothetical protein UTI89_C3865 [Escherichia coli UTI89], gi\|91074413\|... gi\|26249961, gi\|... - gi\|26249961\|ref\|NP_756001.1\| hypothetical protein c4137 [Escherichia coli CFT073], gi\|26110389\|gb\|AA... gi\|218367194, gi... - gi\|218560425\|ref\|YP_002393338.1\| hypothetical protein ECS88_3753 [Escherichia coli S88], gi\|21836719... gi\|218691644, gi... - gi\|218691644\|ref\|YP_002399856.1\| hypothetical protein ECED1_4026 [Escherichia coli ED1a], gi\|2184292...	58.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTDKQKS RLWELQRNRN FQASRRLEGV EMPLVTLTAA EALARLEELR RHYER

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.806	a.140.4	Recombination endonuclease VII, C-terminal and dimerization domains
View	Download	0.789	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.789	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
View	Download	0.787	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.786	a.8.1	Bacterial immunoglobulin/albumin-binding domains
View	Download	0.744	a.140.3	Rho termination factor, N-terminal domain
View	Download	0.694	a.4.1	Homeodomain-like
View	Download	0.584	a.4.1	Homeodomain-like
View	Download	0.563	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits