YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30065256, gi\|...
Organism:	Shigella flexneri 2a str. 2457T
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30065256, gi|....

Description	E-value	Query Range	Subject Range
gi\|26250082, gi\|... - gi\|26250082\|ref\|NP_756122.1\| hypothetical protein c4260 [Escherichia coli CFT073], gi\|26110511\|gb\|AA... gi\|218367304, gi... - gi\|218560535\|ref\|YP_002393448.1\| hypothetical protein ECS88_3870 [Escherichia coli S88], gi\|21836730... gi\|227883613, gi... - gi\|227883613\|ref\|ZP_04001418.1\| inner membrane protein [Escherichia coli 83972], gi\|227839492\|gb\|EEJ... gi\|215266814, gi... - gi\|215488742\|ref\|YP_002331173.1\| hypothetical protein E2348C_3707 [Escherichia coli O127:H6 str. E23... gi\|226902478, gi... - gi\|237703214\|ref\|ZP_04533695.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|194435584, gi... - gi\|83588671\|ref\|ZP_00927295.1\| hypothetical protein Ecol1_01000304 [Escherichia coli 101-1], gi\|1944... gi\|251786715, gi... - gi\|251786715\|ref\|YP_003001019.1\| hypothetical protein B21_03269 [Escherichia coli BL21], gi\|24237898... gi\|191170539, gi... - gi\|75242736\|ref\|ZP_00726480.1\| hypothetical protein EcolF_01000650 [Escherichia coli F11], gi\|191170... gi\|254163391, gi... - gi\|254163391\|ref\|YP_003046499.1\| hypothetical protein ECB_03316 [Escherichia coli B str. REL606], gi... gi\|254290141, gi... - gi\|254290141\|ref\|YP_003055889.1\| hypothetical protein ECD_03316 [Escherichia coli BL21(DE3)], gi\|253... gi\|91212956, gi\|... - gi\|91212956\|ref\|YP_542942.1\| hypothetical protein UTI89_C3982 [Escherichia coli UTI89], gi\|91074530\|... gi\|110345299, gi... - gi\|110643707\|ref\|YP_671437.1\| hypothetical protein ECP_3560 [Escherichia coli 536], gi\|110345299\|gb\|... gi\|117625744, gi... - gi\|117625744\|ref\|YP_859067.1\| hypothetical protein APECO1_2987 [Escherichia coli APEC O1], gi\|115514...	198.0	[0..1]	[119..1]
gi\|82778731, gi\|... - gi\|82778731\|ref\|YP_405080.1\| putative receptor [Shigella dysenteriae Sd197], gi\|81242879\|gb\|ABB63589...	198.0	[0..1]	[119..1]
gi\|192957909, gi... - gi\|75237066\|ref\|ZP_00721122.1\| hypothetical protein EcolE1_01001897 [Escherichia coli E110019], gi\|1... gi\|217321943, gi... - gi\|217325722\|ref\|ZP_03441806.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|209396037, gi... - gi\|209396037\|ref\|YP_002272911.1\| hypothetical protein ECH74115_4787 [Escherichia coli O157:H7 str. E... gi\|13363790, gi\|... - gi\|15833570\|ref\|NP_312343.1\| putative receptor [Escherichia coli O157:H7], gi\|13363790\|dbj\|BAB37739.... gi\|209755986, gi... - pir\|\|D86014 probable receptor yhhM [imported] - Escherichia coli (strain O157:H7, substrain EDL933)... gi\|189002314, gi... - gi\|189002314\|gb\|EDU71300.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|12518126, gi\|... - gi\|15803979\|ref\|NP_290015.1\| putative receptor [Escherichia coli O157:H7 EDL933], gi\|12518126\|gb\|AAG... gi\|168772624, gi... - gi\|187771795\|gb\|EDU35639.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168797253, gi... - gi\|189380003\|gb\|EDU98419.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168785288, gi... - gi\|189374548\|gb\|EDU92964.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|208727373, gi... - gi\|208807572\|ref\|ZP_03249909.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195934961 - gi\|195934961\|ref\|ZP_03080343.1\| putative receptor [Escherichia coli O157:H7 str. EC4024] gi\|208821844, gi... - gi\|208821844\|ref\|ZP_03262164.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208733652, gi... - gi\|208812375\|ref\|ZP_03253704.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|168753235, gi... - gi\|189359208\|gb\|EDU77627.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188018348, gi... - gi\|188018348\|gb\|EDU56470.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189364504, gi... - gi\|189364504\|gb\|EDU82923.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|13363790, gi\|... - gi\|15833570\|ref\|NP_312343.1\| putative receptor [Escherichia coli O157:H7 str. Sakai], gi\|13363790\|db... gi\|168759505, gi... - gi\|189369878\|gb\|EDU88294.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|254795387, gi... - gi\|254795387\|ref\|YP_003080224.1\| hypothetical protein ECSP_4423 [Escherichia coli O157:H7 str. TW143...	198.0	[0..1]	[119..1]
gi\|187730557, gi... - gi\|75179912\|ref\|ZP_00699899.1\| hypothetical protein SboyB_01000239 [Shigella boydii BS512], gi\|18773...	196.0	[0..1]	[119..1]
gi\|194426950, gi... - gi\|75211832\|ref\|ZP_00711896.1\| hypothetical protein EcolB_01001188 [Escherichia coli B171], gi\|19442...	196.0	[0..1]	[119..1]
YHHM_ECOLI - Hypothetical protein yhhM - Escherichia coli gi\|254038635, gi... - gi\|254038635\|ref\|ZP_04872691.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683914... EG12213 - DUF2500 family protein / DUF2500 family protein gi\|169890816, gi... - gi\|170082981\|ref\|YP_001732301.1\| hypothetical protein ECDH10B_3641 [Escherichia coli str. K-12 subst... EG12213 - DUF2500 family protein / DUF2500 family protein gi\|89110545, gi\|... - gi\|89110545\|ref\|AP_004325.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|253771704, gi... - gi\|253771704\|ref\|YP_003034535.1\| putative receptor [Escherichia coli BL21(DE3)], gi\|253322748\|gb\|ACT... gi\|238860394, gi... - gi\|238902558\|ref\|YP_002928354.1\| hypothetical protein BWG_3158 [Escherichia coli BW2952], gi\|2388603...	195.0	[0..1]	[119..1]
gi\|83571608, gi\|... - gi\|83571608\|ref\|ZP_00923048.1\| hypothetical protein Sdys1_01000324 [Shigella dysenteriae 1012], gi\|1...	193.0	[0..1]	[119..1]
gi\|37197027, gi\|... - gi\|37678288\|ref\|NP_932897.1\| hypothetical protein VV0104 [Vibrio vulnificus YJ016], gi\|37197027\|dbj\|...	182.0	[0..5]	[115..57]
gi\|28807991 - gi\|28807991\|dbj\|BAC61228.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28899739, gi\|... - gi\|28899739\|ref\|NP_799344.1\| hypothetical protein VP2965 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153838757, gi... - gi\|153838757\|ref\|ZP_01991424.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	178.0	[0..5]	[115..2]
gi\|27364564, gi\|... - gi\|27364564\|ref\|NP_760092.1\| hypothetical protein VV1_1145 [Vibrio vulnificus CMCP6], gi\|27360683\|gb...	174.0	[0..5]	[115..2]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPPLFFIV IIGLIVVAAS FRFMQQRREK ADNDMAPLQQ KLVVVSNKRE KPINDRRSRQ  60
   61 QEVTPAGTSM RYEASFKPQS GGMEQTFRLD AQQYHALTVG DKGTLSYKGT RFVSFVGEQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.632	b.60.1	Lipocalins
View	Download	0.631	b.61.2	Metalloprotease inhibitor
View	Download	0.619	b.61.2	Metalloprotease inhibitor
View	Download	0.601	b.61.3	D-aminopeptidase, middle and C-terminal domains
View	Download	0.583	b.55.1	PH domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits