YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24114845, gi\|...
Organism:	Shigella flexneri 2a str. 301
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24114845, gi|....

Description	E-value	Query Range	Subject Range
gi\|209921037, gi... - gi\|209921037\|ref\|YP_002295121.1\| hypothetical protein ECSE_3846 [Escherichia coli SE11], gi\|20991429... gi\|194425376, gi... - gi\|194435833\|ref\|ZP_03067936.1\| protein bax [Escherichia coli 101-1], gi\|194425376\|gb\|EDX41360.1\| pr... gi\|218556131, gi... - gi\|218556131\|ref\|YP_002389044.1\| hypothetical protein ECIAI1_3736 [Escherichia coli IAI1], gi\|218362... gi\|215488855, gi... - gi\|215488855\|ref\|YP_002331286.1\| hypothetical protein E2348C_3822 [Escherichia coli O127:H6 str. E23... gi\|192932639, gi... - gi\|193061849\|ref\|ZP_03042946.1\| protein bax [Escherichia coli E22], gi\|192932639\|gb\|EDV85236.1\| prot... gi\|191170312, gi... - gi\|191170312\|ref\|ZP_03031865.1\| protein bax [Escherichia coli F11], gi\|190909120\|gb\|EDV68706.1\| prot... gi\|194414524, gi... - gi\|194427484\|ref\|ZP_03060033.1\| protein bax [Escherichia coli B171], gi\|194414524\|gb\|EDX30797.1\| pro... gi\|193068509, gi... - gi\|193068509\|ref\|ZP_03049471.1\| protein bax [Escherichia coli E110019], gi\|192958160\|gb\|EDV88601.1\| ... gi\|124501558, gi... - gi\|124526864\|ref\|ZP_01698746.1\| Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Escherichia c... gi\|170083079, gi... - gi\|170083079\|ref\|YP_001732399.1\| hypothetical protein ECDH10B_3751 [Escherichia coli str. K-12 subst... gi\|91213084, gi\|... - gi\|91213084\|ref\|YP_543070.1\| hypothetical protein UTI89_C4111 [Escherichia coli UTI89], gi\|91074658\|... gi\|117625853, gi... - gi\|117625853\|ref\|YP_859176.1\| hypothetical protein APECO1_2880 [Escherichia coli APEC O1], gi\|115514... gi\|170018199, gi... - gi\|170018199\|ref\|YP_001723153.1\| hypothetical protein EcolC_0144 [Escherichia coli ATCC 8739], gi\|16... gi\|110345410, gi... - gi\|110643818\|ref\|YP_671548.1\| hypothetical protein ECP_3673 [Escherichia coli 536], gi\|110345410\|gb\|... gi\|188493844, gi... - gi\|188493844\|ref\|ZP_03001114.1\| protein bax [Escherichia coli 53638], gi\|188489043\|gb\|EDU64146.1\| pr... gi\|110617311, gi... - gi\|110807763\|ref\|YP_691283.1\| hypothetical protein SFV_3970 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|187733519, gi... - gi\|187733519\|ref\|YP_001882234.1\| protein bax [Shigella boydii CDC 3083-94], gi\|187430511\|gb\|ACD09785... gi\|227883738, gi... - gi\|227883738\|ref\|ZP_04001543.1\| protein bax [Escherichia coli 83972], gi\|227839318\|gb\|EEJ49784.1\| pr... gi\|242379088, gi... - gi\|251786815\|ref\|YP_003001119.1\| hypothetical protein B21_03373 [Escherichia coli BL21], gi\|24237908... gi\|254290244, gi... - gi\|254290244\|ref\|YP_003055992.1\| hypothetical protein ECD_03422 [Escherichia coli BL21(DE3)], gi\|253... gi\|237703342, gi... - gi\|237703342\|ref\|ZP_04533823.1\| BAX protein [Escherichia sp. 3_2_53FAA], gi\|226902606\|gb\|EEH88865.1\|... gi\|238902660, gi... - gi\|238902660\|ref\|YP_002928456.1\| hypothetical protein BWG_3260 [Escherichia coli BW2952], gi\|2388603... gi\|218691859, gi... - gi\|218691859\|ref\|YP_002400071.1\| hypothetical protein ECED1_4257 [Escherichia coli ED1a], gi\|2184294... gi\|81247352, gi\|... - gi\|82545941\|ref\|YP_409888.1\| hypothetical protein SBO_3578 [Shigella boydii Sb227], gi\|81247352\|gb\|A... gi\|157068727, gi... - gi\|157163047\|ref\|YP_001460365.1\| hypothetical protein EcHS_A3773 [Escherichia coli HS], gi\|157068727... gi\|218367416, gi... - gi\|218560647\|ref\|YP_002393560.1\| hypothetical protein ECS88_3989 [Escherichia coli S88], gi\|21836741... gi\|89110442, gi\|... - gi\|89110442\|ref\|AP_004222.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|218707205, gi... - gi\|218707205\|ref\|YP_002414724.1\| hypothetical protein ECUMN_4082 [Escherichia coli UMN026], gi\|21843... gi\|254163494, gi... - gi\|254163494\|ref\|YP_003046602.1\| hypothetical protein ECB_03422 [Escherichia coli B str. REL606], gi... gi\|218372322, gi... - gi\|218702336\|ref\|YP_002409965.1\| hypothetical protein ECIAI39_4082 [Escherichia coli IAI39], gi\|2183... EG11360 - putative glucosaminidase / Predicted glucosaminidase, function unknown BAX_ECOLI - Protein bax - Escherichia coli EG11360 - putative glucosaminidase / Predicted glucosaminidase, function unknown gi\|26110641, gi\|... - gi\|26250212\|ref\|NP_756252.1\| hypothetical protein c4390 [Escherichia coli CFT073], gi\|26110641\|gb\|AA...	256.0	[0..1]	[274..1]
gi\|81242959, gi\|... - gi\|82778811\|ref\|YP_405160.1\| hypothetical protein SDY_3709 [Shigella dysenteriae Sd197], gi\|81242959...	255.0	[0..1]	[274..1]
gi\|254594927, gi... - gi\|254795527\|ref\|YP_003080364.1\| hypothetical protein ECSP_4566 [Escherichia coli O157:H7 str. TW143... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| putative ATP-binding protein [Escherichia coli O157:H7], gi\|13363927\|db... gi\|209755090, gi... - pir\|\|C86032 probable ATP-binding protein bax [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15804116, gi\|... - gi\|15804116\|ref\|NP_290155.1\| hypothetical protein Z4995 [Escherichia coli O157:H7 EDL933], gi\|125183... gi\|13363927, gi\|... - gi\|15833707\|ref\|NP_312480.1\| hypothetical protein ECs4453 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322613, gi... - gi\|217326392\|ref\|ZP_03442476.1\| protein bax [Escherichia coli O157:H7 str. TW14588], gi\|217322613\|gb... gi\|209397567, gi... - gi\|209397567\|ref\|YP_002273056.1\| protein bax [Escherichia coli O157:H7 str. EC4115], gi\|209158967\|gb... gi\|189404684, gi... - gi\|189404684\|ref\|ZP_02810449.2\| protein bax [Escherichia coli O157:H7 str. EC869], gi\|189374408\|gb\|E... gi\|189403714, gi... - gi\|189403714\|ref\|ZP_02784669.2\| protein bax [Escherichia coli O157:H7 str. EC4501], gi\|189369722\|gb\|... gi\|189402754, gi... - gi\|189402754\|ref\|ZP_02790992.2\| protein bax [Escherichia coli O157:H7 str. EC4486], gi\|189364640\|gb\|... gi\|189401875, gi... - gi\|189401875\|ref\|ZP_02778397.2\| protein bax [Escherichia coli O157:H7 str. EC4401], gi\|189359316\|gb\|... gi\|208819892, gi... - gi\|208819892\|ref\|ZP_03260212.1\| protein bax [Escherichia coli O157:H7 str. EC4042], gi\|208740015\|gb\|... gi\|208814425, gi... - gi\|208814425\|ref\|ZP_03255754.1\| protein bax [Escherichia coli O157:H7 str. EC4045], gi\|208735702\|gb\|... gi\|208806339, gi... - gi\|208806339\|ref\|ZP_03248676.1\| protein bax [Escherichia coli O157:H7 str. EC4206], gi\|208726140\|gb\|... gi\|189405521, gi... - gi\|189405521\|ref\|ZP_02822415.2\| protein bax [Escherichia coli O157:H7 str. EC508], gi\|189380150\|gb\|E... gi\|189010123, gi... - gi\|189010123\|ref\|ZP_02804728.2\| protein bax [Escherichia coli O157:H7 str. EC4076], gi\|189002549\|gb\|... gi\|188024509, gi... - gi\|188024509\|ref\|ZP_02771906.2\| protein bax [Escherichia coli O157:H7 str. EC4113], gi\|188018377\|gb\|... gi\|187775699, gi... - gi\|187775699\|ref\|ZP_02797475.2\| protein bax [Escherichia coli O157:H7 str. EC4196], gi\|187771734\|gb\|...	254.0	[0..1]	[274..1]
gi\|56415556, gi\|... - gi\|56415556\|ref\|YP_152631.1\| hypothetical protein SPA3514 [Salmonella enterica subsp. enterica serov... gi\|197364483, gi... - gi\|197364483\|ref\|YP_002144120.1\| hypothetical protein SSPA3281 [Salmonella enterica subsp. enterica ...	254.0	[0..1]	[274..1]
gi\|205354731, gi... - gi\|205354731\|ref\|YP_002228532.1\| hypothetical protein SG3769 [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=bax] [protein=hypothetical protein] [protein_id=YP_005239898.1] [location=complement(3863082..... gi\|16766948, gi\|... - gi\|16766948\|ref\|NP_462563.1\| hypothetical protein STM3663 [Salmonella typhimurium LT2], gi\|16422227\|... gi\|206710703, gi... - gi\|207858900\|ref\|YP_002245551.1\| hypothetical protein SEN3485 [Salmonella enterica subsp. enterica s...	253.0	[0..1]	[274..1]
gi\|16131441\|ref\|... - putative ATP-binding protein [Escherichia coli K12], putative ATP-binding protein [Escherichia coli ... gi\|466708\|gb\|AAB... - unnamed protein product [Escherichia coli] gi\|466708, gi\|10... - gi\|466708\|gb\|AAB18547.1\| unnamed protein product [Escherichia coli str. K-12 substr. MG1655], pir\|\|S...	252.0	[0..1]	[274..1]
gi\|62182168, gi\|... - gi\|62182168\|ref\|YP_218585.1\| hypothetical protein SC3598 [Salmonella enterica subsp. enterica serova... gi\|224469990, gi... - gi\|224585462\|ref\|YP_002639261.1\| putative exported amidase [Salmonella enterica subsp. enterica sero...	251.0	[0..1]	[274..1]
gi\|25513418, gi\|... - gi\|25513418\|pir\|\|AI0979 probable exported amidase STY4135 [imported] - Salmonella enterica subsp. en... gi\|29139771, gi\|... - gi\|29144134\|ref\|NP_807476.1\| hypothetical protein t3856 [Salmonella enterica subsp. enterica serovar... gi\|16762647 - gi\|16762647\|ref\|NP_458264.1\| hypothetical protein STY4135 [Salmonella enterica subsp. enterica serov...	249.0	[0..1]	[274..1]
gi\|30248327, gi\|... - gi\|30248327\|ref\|NP_840397.1\| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Nitrosomonas eur...	205.0	[0..1]	[270..47]
gi\|75257517 - gi\|75257517\|ref\|ZP_00729020.1\| COG1705: Muramidase (flagellum-specific) [Escherichia coli E22] gi\|75210352 - gi\|75210352\|ref\|ZP_00710514.1\| COG1705: Muramidase (flagellum-specific) [Escherichia coli B171]	195.0	[0..1]	[267..57]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILTPIRRYG AMILMLLTLV FSSEVLAKTH TTTASQKSHL TKASNKQVSS KQEYSRNSAK  60
   61 SSSLPDLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYPSGTPRKK AFLRTVMPYI TSQNAAITAE RNWLISKQYQ GQWAPAERAR LKDIAKRYKV  60
   61 KWSGNTRKIP WNTLLERVDI IPTSMVATMA AAESGWGTSK LARNNNNLFG MKCMKGRCTN 120
  121 APGKVKGYSQ FSSVKESVSA YVTNLNTHPA YSSFRKSRAQ LRKADQEVTA TAMIHKLKGY 180
  181 STKGKSYNNY LFAMYQDNQR LIAAHM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.02
Match:	1gbsA
Description:	CRYSTAL STRUCTURE OF BLACK SWAN GOOSE-TYPE LYSOZYME AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.936204440471049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: